Basic Information
Locus ID:
CH03.1185
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
NTMC2T4.1
Description:
ntmc2t4,ntmc2type4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 15213183 | 15221856 | + | CH03.1185 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 54,322.42 Da | 31.93 | 102.25 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 264 | 364 | 5.63839E-28 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 247 | 1.7E-16 | IPR039010 |
| Pfam | PF00168 | C2 domain | 262 | 355 | 7.0E-23 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 392 | 6.7E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 257 | 417 | 5.1E-34 | IPR035892 |
| SMART | SM00239 | C2_3c | 263 | 361 | 1.0E-19 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 245 | 364 | 20.55582 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 248 | 24.851141 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 304 | 317 | 8.0E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 279 | 291 | 8.0E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 326 | 334 | 8.0E-6 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 501 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 501 | - | - |
| Coils | Coil | Coil | 393 | 417 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 4.02E-214 |
| RefSeq | XP_025804039.1 | synaptotagmin-5 [Panicum hallii] | 2.34E-301 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 3.86E-213 | |
| TrEMBL | A0A8T0V8L9 | Synaptotagmin-5 OS=Panicum virgatum OX=38727 GN=PVAP13_2NG286700 PE=3 SV=1 | 9.29E-301 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology