Basic Information
Locus ID:
CH03.1175
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 15021697 | 15028639 | - | CH03.1175 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 95,833.20 Da | 62.78 | 53.92 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 370 | 398 | 6.4E-10 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 404 | 430 | 9.1E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 363 | 399 | 2.63E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 362 | 400 | 7.8E-16 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 401 | 433 | 2.9E-9 | - |
| SMART | SM00547 | zf_4 | 405 | 429 | 4.8E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 372 | 396 | 6.2E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 370 | 399 | 10.127614 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 403 | 432 | 9.450083 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 407 | 426 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 374 | 393 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 616 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 617 | 638 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 766 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 807 | 821 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 849 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 738 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 673 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 576 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 773 | 800 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 539 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 2.1E-136 |
| RefSeq | XP_039792241.1 | uncharacterized protein LOC120658099 [Panicum virgatum] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 1.41E-19 | |
| TrEMBL | A0A8T0VF23 | Zinc finger protein VAR3, chloroplastic OS=Panicum virgatum OX=38727 GN=PVAP13_2NG289200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology