halophFGD

Basic Information

Locus ID: CH03.1058

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Water Stress and Hypersensitive response

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH03	13195716	13203218	-	CH03.1058

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.10	123,004.96 Da	50.08	77.39	-0.55

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03168	Late embryogenesis abundant protein	813	907	1.8E-13	IPR004864
Pfam	PF03168	Late embryogenesis abundant protein	687	782	1.9E-11	IPR004864
Pfam	PF00098	Zinc knuckle	265	280	3.3E-6	IPR001878
Pfam	PF14223	gag-polypeptide of LTR copia-type	57	189	6.2E-13	-
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	258	288	1.19E-7	IPR036875
SUPERFAMILY	SSF117070	LEA14-like	786	916	2.09E-37	-
SUPERFAMILY	SSF117070	LEA14-like	650	791	2.75E-36	-
Gene3D	G3DSA:4.10.60.10	-	253	315	5.5E-8	-
Gene3D	G3DSA:2.60.40.1820	-	789	911	3.0E-26	-
Gene3D	G3DSA:2.60.40.1820	-	638	788	2.2E-38	-
SMART	SM00343	c2hcfinal6	265	281	8.3E-6	IPR001878
SMART	SM00769	why	792	908	1.7E-18	IPR013990
SMART	SM00769	why	666	783	1.5E-31	IPR013990
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	266	281	11.185619	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	613	638	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	620	638	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	420	440	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	378	446	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	903	923	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	384	407	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	221	256	-	-

Gene Ontology

Biological Process:

GO:0009269 (response to desiccation)

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT2G44060.1	Late embryogenesis abundant protein, group 2.	3.41E-132
RefSeq	XP_034578360.1	uncharacterized protein LOC117842114 [Setaria viridis]	7.59E-201
Swiss-Prot	P22241	Desiccation-related protein PCC27-45 OS=Craterostigma plantagineum OX=4153 PE=2 SV=1	4.05E-12
TrEMBL	A0A4U6VNW2	Late embryogenesis abundant protein, LEA-14 OS=Setaria viridis OX=4556 GN=SEVIR_2G108100v2 PE=3 SV=1	2.99E-199

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg17164, jg21289
Amaranthaceae	Atriplex hortensis	1	Ah036498
Anacardiaceae	Pistacia vera	2	pistato.v30283510, pistato.v30286110
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.2565.V1.1
Asteraceae	Flaveria trinervia	10	Ftri12G22046, Ftri14G07097, Ftri14G29567, Ftri15G09954 ... Ftri16G02439, Ftri17G16313, Ftri18G00329, Ftri3G18514, Ftri5G05340, Ftri6G21183
Brassicaceae	Eutrema salsugineum	3	Thhalv10000485m.g.v1.0, Thhalv10000559m.g.v1.0 ... Thhalv10019725m.g.v1.0
Plantaginaceae	Plantago ovata	1	Pov_00020503
Plumbaginaceae	Limonium bicolor	7	Lb0G36934, Lb1G07027, Lb2G09763, Lb3G16435, Lb5G28942 ... Lb7G32854, Lb8G35981
Poaceae	Echinochloa crus-galli	6	BH03.593, BH08.1422, CH03.1058, CH09.1199, CH09.1422 ... CH09.2839
Poaceae	Zoysia japonica	2	nbis-gene-22814, nbis-gene-34703
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-19756
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000001l.151
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-16804, nbisL1-mrna-19090, nbisL1-mrna-20648 ... nbisL1-mrna-21729, nbisL1-mrna-22119
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-23328
Salicaceae	Populus euphratica	5	populus_peu08647, populus_peu28824, populus_peu30004 ... populus_peu30048, populus_peu31342
Solanaceae	Lycium barbarum	6	gene-LOC132619627, gene-LOC132619940, gene-LOC132624744 ... gene-LOC132629087, gene-LOC132639140, gene-LOC132644263
Solanaceae	Solanum chilense	2	SOLCI000638400, SOLCI006302800
Solanaceae	Solanum pennellii	3	gene-LOC107001448, gene-LOC107009891, gene-LOC114074843
Tamaricaceae	Reaumuria soongarica	10	MSTRG.11085_chr06_-, STRG.3923_chr02_-, gene_11099 ... gene_11100, gene_11964, gene_1304, gene_13465, gene_2644, gene_2935, gene_4748
Tamaricaceae	Tamarix chinensis	1	TC12G1817