halophFGD

Basic Information

Locus ID: CH03.1004

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Copper amine oxidase, N3 domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH03	12209617	12211380	+	CH03.1004

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.27	45,343.43 Da	31.52	74.77	-0.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01179	Copper amine oxidase, enzyme domain	2	390	1.5E-119	IPR015798
SUPERFAMILY	SSF49998	Amine oxidase catalytic domain	2	398	7.46E-127	IPR036460
Gene3D	G3DSA:2.70.98.20	Copper amine oxidase, catalytic domain	1	398	4.1E-135	IPR036460
ProSitePatterns	PS01164	Copper amine oxidase topaquinone signature.	124	137	-	IPR000269
ProSitePatterns	PS01165	Copper amine oxidase copper-binding site signature.	351	364	-	IPR000269

Gene Ontology

Biological Process:

GO:0009308 (amine metabolic process)

Molecular Function:

GO:0005507 (copper ion binding) GO:0008131 (primary methylamine oxidase activity) GO:0048038 (quinone binding)

KEGG Pathway

KO Term:

K00276 (primary-amine oxidase [EC:1.4.3.21])

Pathway:

ko00260 (Glycine, serine and threonine metabolism) map00260 (Glycine, serine and threonine metabolism) ko00350 (Tyrosine metabolism) map00350 (Tyrosine metabolism) ko00360 (Phenylalanine metabolism) map00360 (Phenylalanine metabolism) ko00410 (beta-Alanine metabolism) map00410 (beta-Alanine metabolism) ko00950 (Isoquinoline alkaloid biosynthesis) map00950 (Isoquinoline alkaloid biosynthesis) ko00960 (Tropane, piperidine and pyridine alkaloid biosynthesis) map00960 (Tropane, piperidine and pyridine alkaloid biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Reaction:

R02382 (Tyramine + H2O + Oxygen <=> 4-Hydroxyphenylacetaldehyde + Ammonia + Hydrogen peroxide) R02529 (Aminoacetone + H2O + Oxygen <=> Methylglyoxal + Ammonia + Hydrogen peroxide) R02613 (Phenethylamine + Oxygen + H2O <=> Phenylacetaldehyde + Ammonia + Hydrogen peroxide) R03139 (1,3-Diaminopropane + Oxygen + H2O <=> 3-Aminopropanal + Ammonia + Hydrogen peroxide) R04027 (N-Methylputrescine + Oxygen + H+ <=> 1-Methylpyrrolinium + Hydrogen peroxide + Ammonia) R04300 (Dopamine + H2O + Oxygen <=> 3,4-Dihydroxyphenylacetaldehyde + Ammonia + Hydrogen peroxide) R06154 (Methylamine + Oxygen + H2O <=> Formaldehyde + Ammonia + Hydrogen peroxide) R06740 (Cadaverine + H2O + Oxygen <=> 5-Aminopentanal + Ammonia + Hydrogen peroxide)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G31710.1	Copper amine oxidase family protein.	8.06E-164
RefSeq	XP_002452575.1	primary amine oxidase 2 [Sorghum bicolor]	2.92E-235
Swiss-Prot	F4IAX1	Amine oxidase [copper-containing] alpha 3, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=CuAOalpha3 PE=1 SV=1	7.77E-163
TrEMBL	C5XZ69	Amine oxidase OS=Sorghum bicolor OX=4558 GN=SORBI_3004G243400 PE=3 SV=1	6.59E-234

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg12557, jg23376, jg27588, jg27899, jg27901, jg37223 ... jg37224
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14835, gene_15551
Amaranthaceae	Atriplex hortensis	4	Ah004711, Ah004715, Ah011665, Ah020336
Amaranthaceae	Beta vulgaris	5	BVRB_5g098280, BVRB_5g098290, BVRB_5g098350, BVRB_5g098370 ... BVRB_5g108020
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg31372, Sbi_jg4867, Sbi_jg4872, Sbi_jg57907, Sbi_jg6998 ... Sbi_jg57908, Sbi_jg7229, Sbi_jg7230
Amaranthaceae	Salicornia europaea	4	Seu_jg12778, Seu_jg12779, Seu_jg13104, Seu_jg25539
Amaranthaceae	Suaeda aralocaspica	8	GOSA_00001478, GOSA_00001479, GOSA_00001480, GOSA_00001481 ... GOSA_00001486, GOSA_00001487, GOSA_00003955, GOSA_00003956
Amaranthaceae	Suaeda glauca	16	Sgl00133, Sgl00137, Sgl00281, Sgl00287, Sgl05195, Sgl05337 ... Sgl05343, Sgl18224, Sgl51632, Sgl51633, Sgl51642, Sgl56936, Sgl56937, Sgl56938, Sgl56945, Sgl56946
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000007109, gene:ENSEOMG00000013615 ... gene:ENSEOMG00000013798, gene:ENSEOMG00000020876, gene:ENSEOMG00000022059, gene:ENSEOMG00000024552, gene:ENSEOMG00000030867, gene:ENSEOMG00000037412, gene:ENSEOMG00000046903, gene:ENSEOMG00000050257
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.3AG0015250, CQ.Regalona.r1.3BG0014590 ... CQ.Regalona.r1.5AG0000730, CQ.Regalona.r1.5BG0000860, CQ.Regalona.r1.5BG0000920, CQ.Regalona.r1.9AG0010050, CQ.Regalona.r1.9BG0012380
Anacardiaceae	Pistacia vera	5	pistato.v30143350, pistato.v30143370, pistato.v30191620 ... pistato.v30236890, pistato.v30236910
Apiaceae	Apium graveolens	4	Ag6G01755, Ag8G01597, Ag9G02437, Ag9G02438
Arecaceae	Cocos nucifera	5	COCNU_06G014360, COCNU_07G001890, COCNU_14G012350 ... COCNU_14G012360, COCNU_14G012370
Arecaceae	Phoenix dactylifera	1	gene-LOC103706132
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1268.V1.1, AsparagusV1_03.1540.V1.1 ... AsparagusV1_10.124.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G25881, Ftri7G33144
Brassicaceae	Arabidopsis thaliana	9	AT1G31670.1, AT1G31690.1, AT1G31710.1, AT1G62810.1 ... AT3G43670.1, AT4G12270.1, AT4G12280.1, AT4G12290.1, AT4G14940.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10006982m.g.v1.0, Thhalv10007005m.g.v1.0 ... Thhalv10023306m.g.v1.0, Thhalv10024636m.g.v1.0, Thhalv10028460m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g27360.v2.2, Sp2g01790.v2.2, Sp6g05290.v2.2 ... Sp7g13090.v2.2
Brassicaceae	Brassica nigra	9	BniB01g032540.2N, BniB01g032550.2N, BniB02g058720.2N ... BniB05g021160.2N, BniB05g056570.2N, BniB05g056590.2N, BniB07g018960.2N, BniB07g019010.2N, BniB07g019020.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq03G0141, Ceq03G0145, Ceq09G1332, Ceq09G1339, Ceq09G1340
Casuarinaceae	Casuarina glauca	7	Cgl03G0159, Cgl03G0163, Cgl03G0172, Cgl09G1422, Cgl09G1428 ... Cgl09G1429, Cgl09G1430
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno06g11650, gene.Cymno18g02970
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g03650, gene.Thate02g07180, gene.Thate02g23120 ... gene.Thate02g37610
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-4973, nbisL1-mrna-5425
Nitrariaceae	Nitraria sibirica	8	evm.TU.LG10.1253, evm.TU.LG11.1048, evm.TU.LG11.1050 ... evm.TU.LG11.1052, evm.TU.LG11.1053, evm.TU.LG11.1054, evm.TU.LG11.1055, evm.TU.LG11.1056
Plantaginaceae	Plantago ovata	4	Pov_00004232, Pov_00004236, Pov_00022685, Pov_00026221
Plumbaginaceae	Limonium bicolor	4	Lb2G08954, Lb2G08955, Lb2G08956, Lb2G08962
Poaceae	Echinochloa crus-galli	17	AH03.3407, AH03.3409, AH03.3410, AH03.759, AH03.807, AH08.47 ... AH09.407, BH03.3638, BH03.3639, BH03.3640, BH03.894, BH03.930, BH07.2377, CH03.1004, CH03.1059, CH03.3836, CH07.2454
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_4AG0323880, gene-QOZ80_4BG0354440 ... gene-QOZ80_7AG0562390, gene-QOZ80_7AG0573670, gene-QOZ80_7BG0588850, gene-QOZ80_7BG0593540, gene-QOZ80_7BG0604960
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0106870.1, HORVU.MOREX.r3.4HG0403000.1 ... HORVU.MOREX.r3.4HG0403010.1
Poaceae	Lolium multiflorum	10	gene-QYE76_030432, gene-QYE76_037523, gene-QYE76_038470 ... gene-QYE76_038471, gene-QYE76_040144, gene-QYE76_040146, gene-QYE76_040195, gene-QYE76_040206, gene-QYE76_040558, gene-QYE76_048127
Poaceae	Oryza coarctata	5	Oco07G002130, Oco07G002170, Oco12G009660, Oco13G010580 ... Oco14G011280
Poaceae	Oryza sativa	4	LOC_Os04g20164.1, LOC_Os06g23114.1, LOC_Os06g23140.1 ... LOC_Os12g27110.1
Poaceae	Paspalum vaginatum	5	gene-BS78_02G115000, gene-BS78_02G115100, gene-BS78_K230200 ... gene-BS78_02G322300, gene-BS78_02G322400
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0304502, Pt_Chr0304582, Pt_Chr0304584, Pt_Chr0304586 ... Pt_Chr0305534
Poaceae	Sporobolus alterniflorus	3	Chr24G010730, Chr26G003080, Chr28G009940
Poaceae	Thinopyrum elongatum	2	Tel2E01G167800, Tel4E01G474900
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG008460, gene_TRIDC2BG010180 ... gene_TRIDC4AG002880, gene_TRIDC4BG048750
Poaceae	Triticum aestivum	6	TraesCS2A02G076300.1, TraesCS2B02G091300.1 ... TraesCS2D02G075000.1, TraesCS4A02G020900.1, TraesCS4B02G282700.1, TraesCS4D02G281700.1
Poaceae	Zea mays	2	Zm00001eb107350_P001, Zm00001eb420190_P001
Poaceae	Zoysia japonica	3	nbis-gene-27649, nbis-gene-52772, nbis-gene-631
Poaceae	Zoysia macrostachya	3	Zma_g19383, Zma_g4996, Zma_g6695
Portulacaceae	Portulaca oleracea	11	evm.TU.LG05.2210, evm.TU.LG05.2211, evm.TU.LG10.220 ... evm.TU.LG10.223, evm.TU.LG10.224, evm.TU.LG10.225, evm.TU.LG10.227, evm.TU.LG17.212, evm.TU.LG17.215, evm.TU.LG17.216, evm.TU.LG17.218
Posidoniaceae	Posidonia oceanica	1	gene.Posoc07g06940
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_16_RagTag.284, evm.TU.Scaffold_16_RagTag.285 ... evm.TU.Scaffold_3_RagTag.448, evm.TU.Scaffold_3_RagTag.449, evm.TU.Scaffold_3_RagTag.450
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-1468, nbisL1-mrna-1469, nbisL1-mrna-1470 ... nbisL1-mrna-22520, nbisL1-mrna-22521, nbisL1-mrna-31011, nbisL1-mrna-31012
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-5210, nbisL1-mrna-5211, nbisL1-mrna-6484 ... nbisL1-mrna-6485, nbisL1-mrna-6486
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-20239, nbisL1-mrna-6178, nbisL1-mrna-6179 ... nbisL1-mrna-6180, nbisL1-mrna-6181, nbisL1-mrna-6182
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000019l.393, evm.TU.utg000019l.949 ... evm.TU.utg000019l.950, evm.TU.utg000022l.320, evm.TU.utg000022l.321
Rhizophoraceae	Kandelia obovata	4	Maker00012751, Maker00012803, Maker00014370, Maker00014379
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-18129, nbisL1-mrna-3461, nbisL1-mrna-3462 ... nbisL1-mrna-6348, nbisL1-mrna-6349
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-2118, nbisL1-mrna-2119, nbisL1-mrna-6592 ... nbisL1-mrna-6593, nbisL1-mrna-6594
Salicaceae	Populus euphratica	6	populus_peu03428, populus_peu03429, populus_peu07374 ... populus_peu21373, populus_peu21374, populus_peu21375
Solanaceae	Lycium barbarum	5	gene-LOC132611042, gene-LOC132611043, gene-LOC132618551 ... gene-LOC132635052, gene-LOC132636385
Solanaceae	Solanum chilense	3	SOLCI000977800, SOLCI002989600, SOLCI003526200
Solanaceae	Solanum pennellii	4	gene-LOC107012994, gene-LOC107028398, gene-LOC107030442 ... gene-LOC107030611
Tamaricaceae	Reaumuria soongarica	2	STRG.24031_chr05_-, gene_9347
Tamaricaceae	Tamarix chinensis	1	TC01G2883
Zosteraceae	Zostera marina	1	Zosma02g06220.v3.1