Basic Information
Locus ID:
CH02.886
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
flocculation via cell wall protein-carbohydrate interaction
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 7858186 | 7866333 | + | CH02.886 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 134,491.73 Da | 50.96 | 68.75 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06179 | Surfeit locus protein 5 subunit 22 of Mediator complex | 1070 | 1174 | 5.4E-16 | IPR009332 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 859 | 953 | 2.35E-7 | IPR038765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 719 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 619 | 648 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 667 | 715 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 746 | 781 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 120 | - | - |
| Coils | Coil | Coil | 405 | 432 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07950.1 | Surfeit locus protein 5 subunit 22 of Mediator complex. | 1.29E-28 |
| RefSeq | XP_052134005.1 | uncharacterized protein LOC127752639 [Oryza glaberrima] | 5.07E-89 |
| Q8LCH5 | Mediator of RNA polymerase II transcription subunit 22b OS=Arabidopsis thaliana OX=3702 GN=MED22B PE=1 SV=1 | 1.25E-27 | |
| TrEMBL | B8BAR0 | ULP_PROTEASE domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_29205 PE=3 SV=1 | 3.35E-172 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |