Basic Information
Locus ID:
CH02.811
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DNA recombination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 6994238 | 7002247 | + | CH02.811 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 110,137.77 Da | 43.42 | 76.87 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04480 | RPA1_DBD_A_like | 469 | 578 | 5.89798E-12 | - |
| CDD | cd04476 | RPA1_DBD_C | 751 | 854 | 3.87253E-21 | IPR013955 |
| CDD | cd04481 | RPA1_DBD_B_like | 614 | 721 | 2.87812E-13 | - |
| Pfam | PF08646 | Replication factor-A C terminal domain | 767 | 859 | 5.5E-8 | IPR013955 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 106 | 197 | 7.42E-6 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 594 | 722 | 2.28E-12 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 493 | 585 | 4.28E-6 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 747 | 859 | 8.57E-20 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 492 | 584 | 3.9E-10 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 211 | 287 | 1.2E-5 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 589 | 724 | 6.3E-19 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 100 | 203 | 9.2E-12 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 740 | 882 | 1.2E-22 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 963 | 987 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 945 | 959 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 927 | 942 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 920 | 987 | - | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021311381.1 | replication protein A 70 kDa DNA-binding subunit E isoform X1 [Sorghum bicolor] | 4.16E-167 |
| TrEMBL | A0A1E5V208 | Rep_fac-A_C domain-containing protein (Fragment) OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0019788 PE=4 SV=1 | 3.1E-209 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology