Basic Information
Locus ID:
CH02.804
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 6943822 | 6945280 | + | CH02.804 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 38,730.64 Da | 53.16 | 71.44 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 45 | 215 | 3.4E-61 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 32 | 138 | 7.9E-30 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 140 | 213 | 3.2E-25 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 354 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 2.08E-65 |
| RefSeq | XP_039851248.1 | ubiquitin recognition factor in ER-associated degradation protein 1-like [Panicum virgatum] | 6.2E-118 |
| Q92890 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Homo sapiens OX=9606 GN=UFD1 PE=1 SV=3 | 2.23E-44 | |
| TrEMBL | A0A1W0VW27 | Ubiquitin fusion degradation protein 1 homolog OS=Sorghum bicolor OX=4558 GN=SORBI_3003G074100 PE=3 SV=1 | 9.58E-117 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology