Basic Information
Locus ID:
CH02.77
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 698348 | 706985 | - | CH02.77 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 151,587.52 Da | 52.71 | 78.34 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 1088 | 1215 | 2.48677E-36 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 1090 | 1229 | 6.6E-25 | IPR000608 |
| Pfam | PF12274 | Protein of unknown function (DUF3615) | 600 | 696 | 7.0E-16 | IPR022059 |
| SUPERFAMILY | SSF54495 | UBC-like | 1067 | 1254 | 1.36E-44 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1048 | 1316 | 4.9E-89 | IPR016135 |
| SMART | SM00212 | ubc_7 | 1089 | 1246 | 1.0E-26 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1086 | 1246 | 38.154385 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1289 | 1328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 939 | 977 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 941 | 968 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1301 | 1328 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53025.1 | Ubiquitin-conjugating enzyme family protein. | 2.51E-84 |
| RefSeq | XP_004967389.2 | uncharacterized protein LOC101762180 [Setaria italica] | 0 |
| Q8GY87 | Probable ubiquitin-conjugating enzyme E2 26 OS=Arabidopsis thaliana OX=3702 GN=UBC26 PE=2 SV=2 | 2.43E-83 | |
| TrEMBL | K3XEU0 | Anaphase-promoting complex subunit 1 OS=Setaria italica OX=4555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH06.285, BH01.2970, CH02.77, CH03.2854 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0009100, gene-QOZ80_6BG0489290 |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.4HG0337530.1, HORVU.MOREX.r3.5HG0420880.1 ... |
| Poaceae | Lolium multiflorum | 26 | gene-QYE76_005288, gene-QYE76_012829, gene-QYE76_018150 ... |
| Poaceae | Oryza coarctata | 2 | Oco05G019240, Oco06G020130 |
| Poaceae | Oryza sativa | 4 | LOC_Os06g45620.1, LOC_Os11g09820.1, LOC_Os11g09940.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G033500 |
| Poaceae | Puccinellia tenuiflora | 23 | Pt_Chr0105698, Pt_Chr0107142, Pt_Chr0108101, Pt_Chr0300838 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G027100, Tel6E01G298100, Tel7E01G953600 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3BG053520, gene_TRIDC5AG001940 ... |
| Poaceae | Triticum aestivum | 26 | TraesCS2A02G546100.1, TraesCS3B02G357800.1 ... |