Basic Information
Locus ID:
CH02.596
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 5043893 | 5048471 | - | CH02.596 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 46,064.98 Da | 36.66 | 79.02 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 288 | 0.033 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 47 | 290 | 2.75E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 67 | 335 | 1.5E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 205 | 245 | 0.0037 | IPR001680 |
| SMART | SM00320 | WD40_4 | 123 | 158 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 248 | 289 | 0.37 | IPR001680 |
| SMART | SM00320 | WD40_4 | 24 | 71 | 180.0 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 6.97E-200 |
| RefSeq | XP_039846342.1 | autophagy-related protein 18d-like [Panicum virgatum] | 4.49E-296 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 6.68E-199 | |
| TrEMBL | A0A8T0SA26 | Autophagy-related protein 18c OS=Panicum virgatum OX=38727 GN=PVAP13_5KG074900 PE=4 SV=1 | 1.01E-294 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology