Basic Information
Locus ID:
CH02.554
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 4738904 | 4747192 | + | CH02.554 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 109,961.69 Da | 56.41 | 73.30 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 393 | 423 | 1.61233E-5 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 719 | 848 | 5.25882E-62 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 731 | 839 | 2.1E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 524 | 694 | 3.7E-49 | IPR011545 |
| Pfam | PF00397 | WW domain | 392 | 422 | 2.0E-7 | IPR001202 |
| Pfam | PF13259 | Protein of unknown function (DUF4050) | 208 | 244 | 2.7E-11 | IPR025124 |
| SUPERFAMILY | SSF51045 | WW domain | 387 | 424 | 1.53E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 572 | 855 | 5.87E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 473 | 708 | 1.0E-86 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 372 | 426 | 1.5E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 709 | 881 | 2.0E-59 | IPR027417 |
| SMART | SM00490 | helicmild6 | 759 | 839 | 3.2E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 519 | 722 | 1.0E-63 | IPR014001 |
| SMART | SM00456 | ww_5 | 391 | 424 | 2.3E-7 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 500 | 528 | 10.848828 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 734 | 878 | 25.915192 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 531 | 705 | 31.48385 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 390 | 424 | 11.7036 | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 396 | 422 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 651 | 659 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 981 | 1012 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 984 | 1012 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 1.79E-261 |
| RefSeq | XP_025815285.1 | DEAD-box ATP-dependent RNA helicase 14-like isoform X1 [Panicum hallii] | 0 |
| Q5VQL1 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 | 1.8E-297 | |
| TrEMBL | A0A811P6E6 | DUF4050 domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS22491 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology