Basic Information
Locus ID:
CH02.541
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ABC transporter C family member 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 4652846 | 4658391 | - | CH02.541 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 164,867.69 Da | 39.86 | 104.05 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1273 | 1493 | 6.30843E-121 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 652 | 852 | 1.30035E-109 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 339 | 626 | 6.88257E-97 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 956 | 1250 | 2.31434E-95 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 342 | 605 | 8.7E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 670 | 804 | 1.5E-18 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1292 | 1440 | 5.0E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 958 | 1199 | 3.1E-33 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 944 | 1256 | 8.76E-55 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1264 | 1505 | 2.07E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 328 | 634 | 2.62E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 649 | 874 | 1.02E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1259 | 1511 | 3.5E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 317 | 634 | 4.1E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 637 | 884 | 2.1E-74 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 919 | 1256 | 1.4E-64 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1301 | 1492 | 4.6E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 679 | 852 | 1.8E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 338 | 618 | 29.690361 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1275 | 1509 | 17.013609 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 652 | 875 | 22.575806 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 958 | 1238 | 37.628708 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 777 | 791 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 891 | 930 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 891 | 907 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034596584.1 | ABC transporter C family member 3-like [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6UFR8 | ABC transporter C family member 3 OS=Setaria viridis OX=4556 GN=SEVIR_5G119400v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology