Basic Information
Locus ID:
CH02.515
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
UBP14
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 4441852 | 4460806 | - | CH02.515 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 193,188.45 Da | 51.76 | 75.71 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14295 | UBA1_atUBP14 | 1566 | 1610 | 2.08022E-17 | - |
| CDD | cd00200 | WD40 | 586 | 820 | 5.74955E-52 | - |
| CDD | cd02658 | Peptidase_C19B | 1268 | 1748 | 1.23891E-125 | - |
| Pfam | PF08513 | LisH | 10 | 36 | 5.7E-8 | IPR006594 |
| Pfam | PF00627 | UBA/TS-N domain | 1627 | 1662 | 3.8E-10 | IPR015940 |
| Pfam | PF00400 | WD domain, G-beta repeat | 666 | 703 | 4.3E-4 | IPR001680 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 1267 | 1747 | 2.3E-42 | IPR001394 |
| Pfam | PF00400 | WD domain, G-beta repeat | 590 | 617 | 1.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 747 | 777 | 0.036 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 624 | 659 | 3.5E-6 | IPR001680 |
| Pfam | PF17807 | Variant UBP zinc finger | 968 | 1031 | 1.6E-23 | IPR041432 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 1139 | 1212 | 1.5E-16 | IPR001607 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 1263 | 1750 | 2.55E-77 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1118 | 1225 | 1.41E-31 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 586 | 820 | 3.21E-53 | IPR036322 |
| SUPERFAMILY | SSF46934 | UBA-like | 1615 | 1668 | 5.11E-13 | IPR009060 |
| Gene3D | G3DSA:2.130.10.10 | - | 719 | 824 | 1.8E-17 | IPR015943 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1261 | 1751 | 7.2E-79 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 1601 | 1671 | 8.4E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 1566 | 1600 | 5.8E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1110 | 1212 | 1.7E-37 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 955 | 1057 | 2.5E-34 | IPR013083 |
| Gene3D | G3DSA:2.130.10.10 | - | 565 | 718 | 4.4E-39 | IPR015943 |
| SMART | SM00165 | uba_6 | 1627 | 1664 | 2.7E-10 | IPR015940 |
| SMART | SM00165 | uba_6 | 1566 | 1604 | 5.6E-5 | IPR015940 |
| SMART | SM00667 | Lish | 8 | 40 | 6.0E-6 | IPR006594 |
| SMART | SM00320 | WD40_4 | 788 | 823 | 77.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 620 | 659 | 3.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 663 | 703 | 9.0E-8 | IPR001680 |
| SMART | SM00290 | Zf_UBP_1 | 1138 | 1193 | 5.5E-22 | IPR001607 |
| SMART | SM00320 | WD40_4 | 745 | 786 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 706 | 742 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 578 | 617 | 2.8E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 627 | 662 | 14.61889 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 670 | 712 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 627 | 662 | 12.077406 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 670 | 705 | 9.862871 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 585 | 617 | 8.913786 | - |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 1564 | 1605 | 10.49864 | IPR015940 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1267 | 1750 | 42.106026 | IPR028889 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 585 | 626 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 10.544439 | IPR006594 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 1137 | 1211 | 17.410297 | IPR001607 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 1625 | 1665 | 15.004798 | IPR015940 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 646 | 660 | - | IPR019775 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 1268 | 1283 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 1696 | 1714 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 890 | 934 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 500 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 147 | - | - |
| Coils | Coil | Coil | 117 | 137 | - | - |
| Coils | Coil | Coil | 387 | 407 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20630.1 | ubiquitin-specific protease 14. Encodes a ubiquitin-specific protease. Identical to TTN6. Loss of function mutations are embryo lethals, having development arrested at the preglobular/globular stage. Also involved in root responses to phosphate deficiency. | 0 |
| RefSeq | XP_002457247.1 | ubiquitin carboxyl-terminal hydrolase 14 [Sorghum bicolor] | 0 |
| Q8L6Y1 | Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana OX=3702 GN=UBP14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7DRV8 | Ubiquitin carboxyl-terminal hydrolase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G499500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38312 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12397 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008387 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18793, Sbi_jg37227 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5053 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006986 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl22962, Sgl22969, Sgl28082 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008745, gene:ENSEOMG00000031281 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0020820, CQ.Regalona.r1.4BG0021600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30160200 |
| Apiaceae | Apium graveolens | 1 | Ag4G02697 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G004050, scaffold004260G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709890 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.267.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G32772 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G20630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020069m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g18670.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g043160.2N, BniB07g031450.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1181 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1323 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g11040 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0172s00020.v1.0, Dusal.0172s00021.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g16940 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2476 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1709 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00005221, Pov_00023321, Pov_00023323, Pov_00031516 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G11391, Lb7G35260, Lb7G35262 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.445, AH04.361, BH02.471, BH02.55, CH02.515, CH02.63 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0011830, gene-QOZ80_1BG0060450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0240180.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_050458 |
| Poaceae | Oryza coarctata | 2 | Oco01G003200, Oco02G003230 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g08200.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G042900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0200300 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr03G005470, Chr08G005940, Chr08G005950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G210700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG015320, gene_TRIDC3BG019870 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G122900.1, TraesCS3B02G142100.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb336890_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13186, nbis-gene-6809 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10060, Zma_g7714 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2055, evm.TU.LG14.1234 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g24020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.247 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21970 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13865 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-7238, nbisL1-mrna-7239 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.398 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009382 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6794 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12590 |
| Salicaceae | Populus euphratica | 3 | populus_peu00439, populus_peu17506, populus_peu37691 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132620376 |
| Solanaceae | Solanum chilense | 1 | SOLCI003375900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026308 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20660_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0299 |
| Zosteraceae | Zostera marina | 1 | Zosma02g19560.v3.1 |