Basic Information
Locus ID:
CH02.4740
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 48789924 | 48795974 | + | CH02.4740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 87,338.11 Da | 54.85 | 80.73 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 207 | 466 | 2.69045E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 301 | 336 | 2.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 341 | 381 | 5.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 430 | 466 | 2.7E-4 | IPR001680 |
| Pfam | PF13242 | HAD-hyrolase-like | 700 | 753 | 3.0E-5 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 528 | 770 | 4.21E-28 | IPR036412 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 168 | 467 | 8.06E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 162 | 470 | 4.0E-121 | IPR015943 |
| Gene3D | G3DSA:3.40.50.1000 | - | 592 | 770 | 3.6E-43 | IPR023214 |
| SMART | SM00320 | WD40_4 | 213 | 253 | 0.098 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 293 | 7.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 381 | 2.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 297 | 336 | 1.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 384 | 424 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 169 | 210 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 427 | 466 | 1.2E-7 | IPR001680 |
| TIGRFAM | TIGR01993 | Pyr-5-nucltdase: pyrimidine 5'-nucleotidase | 528 | 743 | 2.3E-63 | IPR010237 |
| TIGRFAM | TIGR01509 | HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 | 697 | 743 | 7.9E-10 | IPR006439 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 434 | 467 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 304 | 336 | 11.075592 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 304 | 345 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 346 | 390 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 434 | 467 | 11.497408 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 453 | 467 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 172 | - | - |
| SFLD | SFLDG01132 | C1.5.3: 5'-Nucleotidase Like | 526 | 775 | 0.0 | IPR010237 |
| SFLD | SFLDS00003 | Haloacid Dehalogenase | 526 | 775 | 0.0 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 5.43E-234 |
| RefSeq | XP_039809734.1 | protein FIZZY-RELATED 3-like [Panicum virgatum] | 1.96E-304 |
| Q8LPL5 | Protein FIZZY-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=FZR3 PE=1 SV=1 | 5.21E-233 | |
| TrEMBL | A0A0E0CDJ9 | WD_REPEATS_REGION domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology