Basic Information
Locus ID:
CH02.4622
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 48002468 | 48010311 | - | CH02.4622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.29 | 99,467.36 Da | 57.81 | 53.14 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 149 | 430 | 1.62159E-69 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 351 | 387 | 0.0042 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 267 | 303 | 6.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 185 | 218 | 0.0034 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 345 | 4.6E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 401 | 430 | 0.0073 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 230 | 261 | 9.5E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 145 | 430 | 1.21E-73 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 124 | 303 | 6.6E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 304 | 440 | 2.4E-37 | IPR015943 |
| SMART | SM00320 | WD40_4 | 348 | 388 | 4.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 303 | 6.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 221 | 261 | 7.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 345 | 2.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 177 | 0.21 | IPR001680 |
| SMART | SM00320 | WD40_4 | 180 | 219 | 2.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 391 | 431 | 1.5E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 187 | 219 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 355 | 387 | 11.109979 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 354 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 229 | 261 | 9.783781 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 187 | 219 | 8.966513 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 399 | 430 | 10.976305 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 399 | 430 | 9.203785 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 229 | 270 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 145 | 177 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 348 | 10.521959 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 355 | 387 | 9.309238 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 312 | 16.256382 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 271 | 308 | 12.235586 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 290 | 304 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 764 | 778 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 798 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 740 | 798 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13480.3 | - | 1.75E-123 |
| RefSeq | XP_004951823.1 | flowering time control protein FY [Setaria italica] | 6.43E-259 |
| Q6NLV4 | Flowering time control protein FY OS=Arabidopsis thaliana OX=3702 GN=FY PE=1 SV=1 | 3.58E-122 | |
| TrEMBL | A0A3L6PTP6 | Flowering time control protein FY OS=Panicum miliaceum OX=4540 GN=C2845_PM14G12870 PE=4 SV=1 | 1.55E-259 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28976 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17172 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032394 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g041450 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29958, Sbi_jg43421 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18479 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004240 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl14343, Sgl14344, Sgl19510, Sgl66259, Sgl66263, Sgl70574 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000015624, gene:ENSEOMG00000021875 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0004450, CQ.Regalona.r1.2BG0005670 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165980 |
| Apiaceae | Apium graveolens | 1 | Ag1G00190 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G008240, COCNU_16G002290 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714650, gene-LOC103722450 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.77.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G16520 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G13480.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012890m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g30540.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g024850.2N, BniB08g006340.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0874 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0886 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g11330 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0510s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g10270 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3166, nbisL1-mrna-4862 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1980 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014814 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02357 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4521, BH02.4571, CH02.4622 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0046570, gene-QOZ80_3BG0295310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0495130.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_058078 |
| Poaceae | Oryza coarctata | 2 | Oco01G029980, Oco02G031140 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g72220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G401000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403030 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G000200, Chr02G000990, Chr05G033670 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G469300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG043980, gene_TRIDC5BG047980 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G293600.2, TraesCS5B02G292800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb140970_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-12611, nbis-gene-26152, nbis-gene-26153 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10909, Zma_g8457 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1077, evm.TU.LG25.286 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g26350 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.55 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7151 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19600 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14506 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.346 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009963 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-241 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22077 |
| Salicaceae | Populus euphratica | 2 | populus_peu04256, populus_peu35076 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635775 |
| Solanaceae | Solanum chilense | 1 | SOLCI002121600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028734 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13509 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3886 |
| Zosteraceae | Zostera marina | 1 | Zosma06g29860.v3.1 |