Basic Information
Locus ID:
CH02.4584
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 47700820 | 47708274 | - | CH02.4584 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 83,690.81 Da | 30.90 | 85.05 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 89 | 351 | 3.1E-78 | IPR013765 |
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 469 | 778 | 1.1E-100 | IPR000490 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 469 | 778 | 1.83E-92 | IPR017853 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 89 | 338 | 3.56E-40 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 354 | 407 | 1.57E-5 | IPR023400 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 469 | 778 | 8.6E-123 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 115 | 419 | 8.1E-88 | IPR027417 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 116 | 274 | 26.060566 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 280 | 356 | 16.551645 | IPR020587 |
| PRINTS | PR00142 | RecA protein signature | 293 | 321 | 1.3E-44 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 327 | 356 | 1.3E-44 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 245 | 274 | 1.3E-44 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 380 | 397 | 1.3E-44 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 207 | 236 | 1.3E-44 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 174 | 203 | 1.3E-44 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 1.24E-117 |
| RefSeq | XP_025816104.1 | DNA repair protein recA homolog 2, mitochondrial [Panicum hallii] | 1.77E-264 |
| Q8RY99 | DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1 | 1.2E-116 | |
| TrEMBL | K3XF24 | Glucan endo-1,3-beta-D-glucosidase OS=Setaria italica OX=4555 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology