Basic Information
Locus ID:
CH02.4551
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
protein heterodimerization activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 47468331 | 47472548 | - | CH02.4551 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 61,039.86 Da | 41.30 | 86.12 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 110 | 148 | 9.1E-7 | IPR001810 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 12 | 86 | 2.23E-10 | IPR011009 |
| SUPERFAMILY | SSF81383 | F-box domain | 105 | 159 | 3.01E-14 | IPR036047 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 7 | 87 | 3.6E-11 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 90 | 179 | 3.7E-7 | - |
| SMART | SM00256 | fbox_2 | 110 | 151 | 7.9E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 104 | 151 | 8.570165 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65600.1 | Concanavalin A-like lectin protein kinase family protein. | 1.42E-12 |
| RefSeq | XP_039812140.1 | uncharacterized protein LOC120675117 [Panicum virgatum] | 5.85E-147 |
| Q9LSL5 | L-type lectin-domain containing receptor kinase IX.2 OS=Arabidopsis thaliana OX=3702 GN=LECRK92 PE=1 SV=1 | 1.42E-11 | |
| TrEMBL | A0A3L6SUH7 | F-box domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM07G02170 PE=4 SV=1 | 5.44E-185 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 15 | AH02.4407, AH02.4459, BH01.1168, BH02.4439, BH02.4440 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0045470, gene-QOZ80_1AG0045480 ... |
| Poaceae | Oryza coarctata | 4 | Oco01G002080, Oco02G002070, Oco02G002100, Oco02G003320 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g05880.1, LOC_Os01g05890.1 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_01G264100, gene-BS78_03G398000, gene-BS78_K095000 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0205593, Pt_Chr0205600, Pt_Chr0205696 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G830700 |
| Poaceae | Triticum aestivum | 2 | TraesCS7B02G392200.1.cds1, TraesCSU02G244400.1.cds1 |
| Poaceae | Zea mays | 2 | Zm00001eb298720_P001, Zm00001eb298750_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10900 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9325 |