Basic Information
Locus ID:
CH02.4525
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 47338400 | 47341584 | + | CH02.4525 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 27,824.85 Da | 51.62 | 82.08 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00888 | Cullin family | 2 | 200 | 2.4E-25 | IPR001373 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 2 | 216 | 2.04E-37 | IPR016159 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 96 | 228 | 1.0E-13 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 1 | 93 | 3.5E-20 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04340 (Hedgehog signaling pathway)
map04340 (Hedgehog signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_012701649.2 | LOW QUALITY PROTEIN: putative cullin-like protein 1 [Setaria italica] | 8.14E-148 |
| Q5ZC88 | Cullin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CUL1 PE=1 SV=1 | 4.93E-24 | |
| TrEMBL | A0A3L6SMS1 | Putative cullin-like protein 1 OS=Panicum miliaceum OX=4540 GN=C2845_PM07G34070 PE=3 SV=1 | 3.71E-148 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11992 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005783 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g081090 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17091, Sbi_jg61634 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg356 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008391 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24492, Sgl29674 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008591, gene:ENSEOMG00000026987 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0006040, CQ.Regalona.r1.4AG0008480 ... |
| Apiaceae | Apium graveolens | 2 | Ag1G00511, Ag1G00512 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G009480 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716058 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G59790.1 |
| Brassicaceae | Brassica nigra | 2 | BniB08g045230.2N, BniB08g067860.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1194 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1248 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026597 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4439, BH02.4478, CH02.4525 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1BG0065810, gene-QOZ80_1BG0095770 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0314170.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057720 |
| Poaceae | Oryza coarctata | 1 | Oco02G030580 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g70920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G395800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403170 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G001580, Chr05G032890 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G724200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG064620, gene_TRIDC3BG072950 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G457400.1, TraesCS3B02G497300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb142010_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28221 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11888 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.663, evm.TU.LG22.1261 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7521 |
| Salicaceae | Populus euphratica | 3 | populus_peu13388, populus_peu15721, populus_peu34273 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132605704, gene-LOC132605708, gene-LOC132644298 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI006323400, SOLCI006610600 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107013940, gene-LOC107015883, gene-LOC107021954 |