Basic Information
Locus ID:
CH02.4522
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 47310380 | 47311105 | - | CH02.4522 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 26,271.74 Da | 46.46 | 74.86 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 170 | 219 | 1.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 225 | 1.94E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 233 | 2.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 172 | 218 | 3.4E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 172 | 219 | 13.226928 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62690.1 | AtL5. Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end. | 7.16E-10 |
| RefSeq | XP_025819298.1 | uncharacterized protein LOC112895548 [Panicum hallii] | 4.29E-92 |
| Q9LZJ6 | RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1 | 7.07E-9 | |
| TrEMBL | A0A2T7DBZ8 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G027700 PE=4 SV=1 | 1.7E-92 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH02.4430, AH02.4436, BH02.4470, BH02.4476, CH02.4517 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G395500 |
| Poaceae | Zea mays | 7 | Zm00001eb141740_P001, Zm00001eb141780_P001 ... |