halophFGD

Basic Information

Locus ID: CH02.4513

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: WD domain, G-beta repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH02	47251650	47255183	-	CH02.4513

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.45	48,688.25 Da	55.23	76.42	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	271	299	0.18	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	317	348	0.022	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	98	427	3.82E-32	IPR036322
Gene3D	G3DSA:2.130.10.10	-	101	426	5.1E-22	IPR015943
SMART	SM00320	WD40_4	182	217	210.0	IPR001680
SMART	SM00320	WD40_4	307	348	0.0066	IPR001680
SMART	SM00320	WD40_4	86	123	380.0	IPR001680
SMART	SM00320	WD40_4	264	304	9.8E-4	IPR001680
SMART	SM00320	WD40_4	389	428	120.0	IPR001680
MobiDBLite	mobidb-lite	consensus disorder prediction	39	53	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	85	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	63	79	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	28	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G62770.1	Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence.	2.35E-189
RefSeq	XP_004971179.1	autophagy-related protein 18a [Setaria italica]	3.93E-268
Swiss-Prot	Q93VB2	Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1	2.26E-188
TrEMBL	K3XHQ6	WD_REPEATS_REGION domain-containing protein OS=Setaria italica OX=4555 GN=101771649 PE=4 SV=1	8.88E-267

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10095, jg34063, jg35211, jg8871
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10418, gene_24398, gene_6321
Amaranthaceae	Atriplex hortensis	3	Ah005758, Ah029935, Ah032174
Amaranthaceae	Beta vulgaris	2	BVRB_2g038550, BVRB_7g164090
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg1411, Sbi_jg17114, Sbi_jg30094, Sbi_jg35161 ... Sbi_jg43543, Sbi_jg61660
Amaranthaceae	Salicornia europaea	3	Seu_jg18359, Seu_jg3326, Seu_jg379
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00003508, GOSA_00004134
Amaranthaceae	Suaeda glauca	7	Sgl24510, Sgl24523, Sgl29690, Sgl66126, Sgl70436, Sgl73754 ... Sgl77260
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000006243, gene:ENSEOMG00000011629 ... gene:ENSEOMG00000015551, gene:ENSEOMG00000020895, gene:ENSEOMG00000029774, gene:ENSEOMG00000034296, gene:ENSEOMG00000039340, gene:ENSEOMG00000049890
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2AG0005350, CQ.Regalona.r1.2BG0004460 ... CQ.Regalona.r1.4AG0008270, CQ.Regalona.r1.4BG0008410, CQ.Regalona.r1.7AG0013820, CQ.Regalona.r1.7BG0015720
Anacardiaceae	Pistacia vera	2	pistato.v30009560, pistato.v30083820
Apiaceae	Apium graveolens	4	Ag10G01835, Ag10G02709, Ag4G01795, Ag7G01603
Arecaceae	Cocos nucifera	5	COCNU_04G004930, COCNU_04G012530, COCNU_16G003310 ... COCNU_16G005530, scaffold001400G000050
Arecaceae	Phoenix dactylifera	4	gene-LOC103707285, gene-LOC103715269, gene-LOC103716696 ... gene-LOC120110184
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.3016.V1.1, AsparagusV1_05.585.V1.1 ... AsparagusV1_05.923.V1.1, AsparagusV1_07.746.V1.1, AsparagusV1_Unassigned.145.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G26838, Ftri3G18597, Ftri8G10558
Brassicaceae	Arabidopsis thaliana	4	AT2G40810.1, AT2G47720.1, AT3G56440.1, AT3G62770.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10005977m.g.v1.0, Thhalv10006031m.g.v1.0 ... Thhalv10016737m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp4g23130.v2.2, Sp5g00750.v2.2, Sp5g06070.v2.2
Brassicaceae	Brassica nigra	4	BniB01g004580.2N, BniB06g052230.2N, BniB06g061440.2N ... BniB08g071050.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0008, Ceq06G0926, Ceq06G0927
Casuarinaceae	Casuarina glauca	2	Cgl02G0012, Cgl06G0954
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g00960, gene.Cymno03g13440, gene.Cymno18g00910
Dunaliellaceae	Dunaliella salina	1	Dusal.0227s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g08740, gene.Thate05g01250, gene.Thate08g11430
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-1863, nbisL1-mrna-6269
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1649, evm.TU.LG04.314
Plantaginaceae	Plantago ovata	4	Pov_00008267, Pov_00024850, Pov_00024851, Pov_00036311
Plumbaginaceae	Limonium bicolor	6	Lb1G02500, Lb1G07582, Lb1G07625, Lb2G12921, Lb4G21554 ... Lb4G21561
Poaceae	Echinochloa crus-galli	12	AH02.4425, AH02.517, AH03.4014, AH05.1109, BH02.4465 ... BH02.535, BH03.311, BH05.1378, CH02.4513, CH02.596, CH05.1309, CH07.165
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0011110, gene-QOZ80_1AG0045660 ... gene-QOZ80_1BG0059710, gene-QOZ80_1BG0095650, gene-QOZ80_5AG0403330, gene-QOZ80_5BG0451710, gene-QOZ80_7AG0581220, gene-QOZ80_7BG0612320
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0026100.1, HORVU.MOREX.r3.3HG0234270.1 ... HORVU.MOREX.r3.3HG0313730.1, HORVU.MOREX.r3.4HG0380910.1
Poaceae	Lolium multiflorum	6	gene-QYE76_009815, gene-QYE76_018187, gene-QYE76_038861 ... gene-QYE76_038862, gene-QYE76_049936, gene-QYE76_057676
Poaceae	Oryza coarctata	6	Oco01G002680, Oco01G029290, Oco02G002730, Oco02G030490 ... Oco13G015400, Oco14G016230
Poaceae	Oryza sativa	4	LOC_Os01g07400.1, LOC_Os01g70780.1, LOC_Os05g07710.3 ... LOC_Os07g47410.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G051700, gene-BS78_03G394100 ... gene-BS78_09G066300
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0107882, Pt_Chr0207424, Pt_Chr0306736, Pt_Chr0501698 ... Pt_Chr0501743, Pt_Chr0600710
Poaceae	Sporobolus alterniflorus	11	Chr01G011680, Chr02G001700, Chr02G001770, Chr02G019440 ... Chr03G004930, Chr03G023340, Chr05G010410, Chr05G032780, Chr08G000030, Chr08G018660, Chr20G010820
Poaceae	Thinopyrum elongatum	5	Tel1E01G209700, Tel2E01G245900, Tel3E01G166700 ... Tel3E01G717400, Tel4E01G322300
Poaceae	Triticum dicoccoides	8	gene_TRIDC1AG014430, gene_TRIDC1BG019650 ... gene_TRIDC3AG011460, gene_TRIDC3AG064120, gene_TRIDC3BG015410, gene_TRIDC3BG072040, gene_TRIDC4AG017410, gene_TRIDC4BG034370
Poaceae	Triticum aestivum	9	TraesCS1A02G112700.1, TraesCS1B02G132900.1 ... TraesCS1D02G114300.1, TraesCS3A02G095300.1, TraesCS3A02G453200.1, TraesCS3B02G110900.1, TraesCS3B02G490900.1, TraesCS3D02G095500.1, TraesCS4B02G179000.2
Poaceae	Zea mays	4	Zm00001eb123160_P001, Zm00001eb142210_P001 ... Zm00001eb336470_P001, Zm00001eb363500_P001
Poaceae	Zoysia japonica	7	nbis-gene-10891, nbis-gene-13104, nbis-gene-136 ... nbis-gene-23530, nbis-gene-28234, nbis-gene-58212, nbis-gene-6868
Poaceae	Zoysia macrostachya	6	Zma_g10020, Zma_g11877, Zma_g26511, Zma_g7046, Zma_g7667 ... Zma_g9332
Portulacaceae	Portulaca oleracea	5	evm.TU.LG03.813, evm.TU.LG05.447, evm.TU.LG08.672 ... evm.TU.LG12.921, evm.TU.LG22.1277
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g27630, gene.Posoc02g33070, gene.Posoc07g12670
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.129, evm.TU.Scaffold_5_RagTag.885 ... evm.TU.Scaffold_9_RagTag.834
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11460, nbisL1-mrna-8137, nbisL1-mrna-8143
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1712, nbisL1-mrna-1881, nbisL1-mrna-5125
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-11511, nbisL1-mrna-18465, nbisL1-mrna-5209
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.574, evm.TU.utg000006l.237 ... evm.TU.utg000012l.94
Rhizophoraceae	Kandelia obovata	3	Maker00009869, Maker00011254, Maker00013028
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10065, nbisL1-mrna-1551, nbisL1-mrna-7865
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-119, nbisL1-mrna-5217, nbisL1-mrna-7504
Salicaceae	Populus euphratica	6	populus_peu13375, populus_peu15707, populus_peu19121 ... populus_peu27230, populus_peu31211, populus_peu37176
Solanaceae	Lycium barbarum	4	gene-LOC132609568, gene-LOC132635574, gene-LOC132638431 ... gene-LOC132645935
Solanaceae	Solanum chilense	3	SOLCI001649000, SOLCI002271800, SOLCI003536000
Solanaceae	Solanum pennellii	3	gene-LOC107008157, gene-LOC107023781, gene-LOC107027240
Tamaricaceae	Reaumuria soongarica	3	STRG.10618_chr07_-, STRG.32329_chr09_-, STRG.8405_chr05_+
Tamaricaceae	Tamarix chinensis	3	TC01G3979, TC02G1357, TC08G0615
Zosteraceae	Zostera marina	2	Zosma01g11850.v3.1, Zosma06g22110.v3.1