Basic Information
Locus ID:
CH02.4496
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 47168829 | 47172072 | + | CH02.4496 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.64 | 82,763.76 Da | 75.98 | 61.69 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 597 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 297 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039812141.1 | uncharacterized protein LOC120675118 [Panicum virgatum] | 3.59E-17 |
| TrEMBL | A0A1E5VTP8 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0010471 PE=4 SV=1 | 6.51E-27 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH02.4409, BH02.4448, CH02.1430, CH02.4496, CH02.4497 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0312920.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_016886, gene-QYE76_016887, gene-QYE76_057622 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G392400 |