Basic Information
Locus ID:
CH02.445
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
UBC3
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 3818195 | 3820852 | - | CH02.445 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 18,913.33 Da | 53.65 | 82.18 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 158 | 7.97434E-68 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 8 | 157 | 1.4E-45 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 163 | 7.52E-58 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 165 | 9.3E-63 | IPR016135 |
| SMART | SM00212 | ubc_7 | 7 | 163 | 3.6E-58 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 4 | 163 | 54.746376 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 90 | 105 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 6.6E-102 |
| RefSeq | XP_002457220.1 | ubiquitin-conjugating enzyme E2 2 [Sorghum bicolor] | 6.85E-103 |
| P42745 | Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana OX=3702 GN=UBC2 PE=2 SV=1 | 6.34E-101 | |
| TrEMBL | B4FTK1 | Ubiquitin-conjugating enzyme E2 2 OS=Zea mays OX=4577 GN=100284762 PE=2 SV=1 | 1.55E-101 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology