Basic Information
Locus ID:
CH02.4447
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 46827240 | 46827710 | - | CH02.4447 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.69 | 16,275.05 Da | 42.43 | 87.50 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00139 | Legume lectin domain | 1 | 145 | 4.2E-28 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 1 | 145 | 3.36E-34 | IPR013320 |
| Gene3D | G3DSA:2.60.120.200 | - | 1 | 147 | 6.6E-35 | - |
| ProSitePatterns | PS00307 | Legume lectins beta-chain signature. | 42 | 48 | - | IPR019825 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04960.2 | - | 1.28E-6 |
| RefSeq | XP_039851875.1 | L-type lectin-domain containing receptor kinase IX.2-like [Panicum virgatum] | 1.14E-42 |
| G7LII0 | Lectin 7 OS=Medicago truncatula OX=3880 GN=LEC7 PE=2 SV=1 | 9.83E-16 | |
| TrEMBL | A0A835DV90 | Lectin_legB domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_064673 PE=3 SV=1 | 4.8E-53 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | BH02.4399, CH02.4447, CH04.698 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0044910, gene-QOZ80_6BG0472060 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0103660.1, HORVU.MOREX.r3.3HG0325350.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_033622, gene-QYE76_033626, gene-QYE76_038280 ... |
| Poaceae | Oryza sativa | 1 | LOC_Os08g24670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G182600 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G033140, Chr05G000710 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G130100, Tel2E01G132800 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2AG006430 |
| Poaceae | Triticum aestivum | 8 | TraesCS2A02G055200.1, TraesCS2A02G057000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb142870_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52831 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26408 |