Basic Information
Locus ID:
CH02.4425
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 46576758 | 46578303 | - | CH02.4425 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 40,383.50 Da | 44.66 | 82.04 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 330 | 370 | 2.9E-6 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 119 | 234 | 2.35E-13 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 46 | 100 | 1.01E-7 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 329 | 376 | 4.19E-9 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 314 | 374 | 3.1E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 101 | 305 | 3.3E-17 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 328 | 370 | 11.092784 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 8.84E-117 |
| RefSeq | XP_039812977.1 | F-box protein At1g67340-like [Panicum virgatum] | 3.98E-222 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 8.51E-116 | |
| TrEMBL | A0A8T0SBV7 | MYND-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5NG264400 PE=4 SV=1 | 9.0E-221 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology