Basic Information
Locus ID:
CH02.4392
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 46362915 | 46364605 | - | CH02.4392 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 10,947.14 Da | 46.08 | 63.13 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 17 | 90 | 1.60497E-49 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 19 | 89 | 2.8E-25 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 7 | 94 | 3.13E-28 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 2 | 94 | 1.7E-39 | - |
| SMART | SM00213 | ubq_7 | 19 | 90 | 4.5E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 17 | 94 | 15.927915 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 6.18E-56 |
| RefSeq | XP_002458989.1 | small ubiquitin-related modifier 1 [Sorghum bicolor] | 3.46E-63 |
| P55857 | Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1 | 1.16E-61 | |
| TrEMBL | A0A1E5V9F4 | Small ubiquitin-related modifier OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0017317 PE=3 SV=1 | 3.31E-63 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology