Basic Information
Locus ID:
CH02.4377
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc knuckle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 46242614 | 46246644 | - | CH02.4377 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 79,992.18 Da | 55.94 | 59.77 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 262 | 303 | 5.92629E-13 | - |
| Pfam | PF13696 | Zinc knuckle | 172 | 192 | 1.7E-8 | IPR025829 |
| Pfam | PF08783 | DWNN domain | 4 | 80 | 2.0E-21 | IPR014891 |
| SUPERFAMILY | SSF57850 | RING/U-box | 258 | 326 | 1.7E-9 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 172 | 218 | 8.9E-8 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 170 | 195 | 2.6E-5 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 85 | 2.2E-19 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 196 | 238 | 5.9E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 251 | 335 | 2.2E-9 | IPR013083 |
| SMART | SM01180 | DWNN_2 | 4 | 81 | 8.2E-24 | IPR014891 |
| SMART | SM00343 | c2hcfinal6 | 202 | 218 | 0.11 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 176 | 192 | 0.025 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 203 | 217 | 8.581337 | IPR001878 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 4 | 81 | 15.239768 | IPR014891 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 177 | 192 | 8.910993 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 557 | 586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 616 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 726 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 642 | 717 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 617 | 641 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.4 | - | 1.5E-47 |
| RefSeq | XP_025818471.1 | E3 ubiquitin ligase PQT3-like isoform X1 [Panicum hallii] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 4.8E-46 | |
| TrEMBL | A0A2S3HNQ3 | DWNN domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_5G044200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology