halophFGD

Basic Information

Locus ID: CH02.4285

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: source UniProtKB

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH02	45665458	45674656	+	CH02.4285

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.39	140,743.89 Da	66.90	77.33	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09272	RNase_HI_RT_Ty1	702	781	6.90061E-33	-
Pfam	PF13976	GAG-pre-integrase domain	28	73	5.4E-9	IPR025724
Pfam	PF07727	Reverse transcriptase (RNA-dependent DNA polymerase)	498	657	2.3E-46	IPR013103
Pfam	PF00665	Integrase core domain	88	186	9.6E-11	IPR001584
SUPERFAMILY	SSF53098	Ribonuclease H-like	88	244	6.26E-38	IPR012337
SUPERFAMILY	SSF56672	DNA/RNA polymerases	498	642	4.4E-11	IPR043502
Gene3D	G3DSA:3.30.420.10	-	82	258	1.4E-34	IPR036397
ProSiteProfiles	PS50994	Integrase catalytic domain profile.	85	250	20.507614	IPR001584
MobiDBLite	mobidb-lite	consensus disorder prediction	933	964	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	994	1012	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	868	1020	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	801	848	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	679	701	-	-

Gene Ontology

Biological Process:

GO:0015074 (DNA integration)

Molecular Function:

GO:0003676 (nucleic acid binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G23160.2	-	5.66E-47
RefSeq	XP_020401379.2	LOW QUALITY PROTEIN: uncharacterized protein LOC103642667 [Zea mays]	3.69E-214
Swiss-Prot	Q94HW2	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1	6.15E-114
TrEMBL	A0A0A9V1F3	Integrase catalytic domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1	3.9800000001823E-314

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	11	Sbi_jg22532, Sbi_jg22994, Sbi_jg35991, Sbi_jg47084 ... Sbi_jg5628, Sbi_jg58328, Sbi_jg60530, Sbi_jg61478, Sbi_jg63342, Sbi_jg8665, Sbi_jg9642
Amaranthaceae	Salicornia europaea	3	Seu_jg13583, Seu_jg220, Seu_jg24372
Amaranthaceae	Suaeda glauca	22	Sgl20258, Sgl21425, Sgl22765, Sgl23137, Sgl26539, Sgl26751 ... Sgl28247, Sgl28348, Sgl34681, Sgl35523, Sgl40897, Sgl43954, Sgl43993, Sgl48719, Sgl48762, Sgl51791, Sgl52022, Sgl53267, Sgl54094, Sgl55419, Sgl57325, Sgl58530
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000004351, gene:ENSEOMG00000049261
Anacardiaceae	Pistacia vera	1	pistato.v30096180
Asteraceae	Flaveria trinervia	1	Ftri3G03871
Brassicaceae	Schrenkiella parvula	1	Sp7g03155.v2.2
Brassicaceae	Brassica nigra	13	BniB01g008680.2N, BniB01g011550.2N, BniB01g033040.2N ... BniB02g033300.2N, BniB04g047250.2N, BniB04g052240.2N, BniB05g063000.2N, BniB06g045160.2N, BniB07g001750.2N, BniB07g029480.2N, BniB07g034250.2N, BniB07g043950.2N, BniB08g017720.2N
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g08420, gene.Cymno02g12120, gene.Cymno07g04820
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g15590, gene.Thate06g10480
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-7277
Plantaginaceae	Plantago ovata	7	Pov_00001112, Pov_00012497, Pov_00029344, Pov_00029907 ... Pov_00031130, Pov_00035796, Pov_00041323
Plumbaginaceae	Limonium bicolor	2	Lb1G00201, Lb1G06209
Poaceae	Echinochloa crus-galli	3	CH01.4204, CH02.4285, CH02.754
Poaceae	Lolium multiflorum	23	gene-QYE76_000053, gene-QYE76_005675, gene-QYE76_009235 ... gene-QYE76_009560, gene-QYE76_012081, gene-QYE76_012926, gene-QYE76_013696, gene-QYE76_016216, gene-QYE76_022787, gene-QYE76_024878, gene-QYE76_025602, gene-QYE76_025751, gene-QYE76_034510, gene-QYE76_038282, gene-QYE76_053921, gene-QYE76_054335, gene-QYE76_055424, gene-QYE76_057980, gene-QYE76_059298, gene-QYE76_062503, gene-QYE76_064015, gene-QYE76_066038, gene-QYE76_071481
Poaceae	Oryza coarctata	7	Oco02G011690, Oco02G031780, Oco03G007110, Oco03G009910 ... Oco09G006540, Oco16G006370, Oco22G008980
Poaceae	Sporobolus alterniflorus	24	Chr01G024190, Chr01G024200, Chr05G013180, Chr05G013190 ... Chr07G010460, Chr07G013140, Chr08G012100, Chr08G012270, Chr09G005120, Chr12G015710, Chr13G016330, Chr15G017680, Chr16G013230, Chr17G009520, Chr17G009530, Chr18G003390, Chr21G013910, Chr24G013840, Chr25G010030, Chr25G010040, Chr25G014830, Chr25G014840, Chr29G009710, Chr30G014440
Poaceae	Zoysia japonica	7	nbis-gene-15370, nbis-gene-31910, nbis-gene-43348 ... nbis-gene-5120, nbis-gene-56072, nbis-gene-58384, nbis-gene-58844
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g29300
Solanaceae	Solanum pennellii	1	gene-LOC114075978
Tamaricaceae	Reaumuria soongarica	3	MSTRG.20127_chr11_-, STRG.30077_chr10_+, gene_8045