Basic Information
Locus ID:
CH02.4259
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 45497012 | 45499810 | - | CH02.4259 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 36,633.55 Da | 48.47 | 83.22 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 66 | 116 | 6.2E-12 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 117 | 241 | 5.1E-48 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 118 | 241 | 9.74E-15 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 244 | 299 | 2.49E-8 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 117 | 307 | 5.9E-56 | IPR027417 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 175 | 246 | 26.275166 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 187 | 195 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 217 | 246 | 2.7E-51 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 184 | 212 | 2.7E-51 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 271 | 288 | 2.7E-51 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 137 | 166 | 2.7E-51 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 99 | 128 | 2.7E-51 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 61 | - | - |
| Coils | Coil | Coil | 282 | 302 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 1.23E-110 |
| RefSeq | XP_004970942.1 | DNA repair protein recA homolog 3, mitochondrial [Setaria italica] | 1.28E-201 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 1.19E-109 | |
| TrEMBL | K3XI24 | DNA repair protein recA homolog 3, mitochondrial OS=Setaria italica OX=4555 GN=101781240 PE=3 SV=1 | 2.9E-200 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology