Basic Information
Locus ID:
CH02.418
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 3562736 | 3566200 | - | CH02.418 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 44,954.91 Da | 46.75 | 77.97 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 137 | 169 | 2.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 255 | 290 | 9.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 295 | 329 | 7.6E-4 | IPR001680 |
| Pfam | PF13570 | PQQ-like domain | 206 | 244 | 0.0019 | IPR025666 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 132 | 420 | 2.87E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 123 | 192 | 3.7E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 194 | 423 | 1.4E-34 | IPR015943 |
| SMART | SM00320 | WD40_4 | 293 | 330 | 4.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 381 | 418 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 246 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 130 | 169 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 253 | 290 | 6.9E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 260 | 299 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 137 | 169 | 11.339228 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 137 | 178 | 14.652308 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 260 | 291 | 10.548323 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 277 | 291 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 277 | 291 | 6.4E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 317 | 331 | 6.4E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 156 | 170 | 6.4E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 112 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 9.71E-70 |
| RefSeq | XP_039811404.1 | zinc finger CCCH domain-containing protein 17-like isoform X1 [Panicum virgatum] | 2.48E-217 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 7.71E-93 | |
| TrEMBL | A0A8T0RK00 | WD_REPEATS_REGION domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5NG039800 PE=4 SV=1 | 8.03E-215 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology