Basic Information
Locus ID:
CH02.3997
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 43559618 | 43560091 | + | CH02.3997 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 15,768.07 Da | 60.96 | 94.46 | 0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 96 | 140 | 1.0E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 89 | 146 | 2.32E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 87 | 150 | 2.3E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 96 | 139 | 7.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 96 | 140 | 11.928664 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35000.1 | RING/U-box superfamily protein. E3 ligase-like protein induced by chitin oligomers. | 4.1E-8 |
| RefSeq | XP_004972235.1 | E3 ubiquitin-protein ligase EL5 [Setaria italica] | 1.04E-53 |
| O64763 | E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1 | 4.07E-7 | |
| TrEMBL | A0A1E5V3V8 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0019152 PE=4 SV=1 | 2.93E-64 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.3710, BH02.3248, CH02.3997 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0038210, gene-QOZ80_1BG0088200 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0297780.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055654 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G319900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr05G027310 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G548500, Tel3E01G552500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG049770, gene_TRIDC3BG056070 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G345400.1.cds1, TraesCS3B02G377500.1.cds1 ... |