Basic Information
Locus ID:
CH02.3953
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 43173807 | 43201517 | + | CH02.3953 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 193,635.48 Da | 36.88 | 91.69 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 598 | 865 | 8.32607E-92 | - |
| CDD | cd14066 | STKc_IRAK | 1460 | 1724 | 4.34863E-94 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 595 | 862 | 2.2E-48 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1457 | 1722 | 7.1E-47 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 916 | 1241 | 5.1E-43 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 13 | 357 | 1.36E-50 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 578 | 874 | 7.55E-78 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1440 | 1730 | 1.13E-78 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 566 | 667 | 4.4E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 902 | 1006 | 1.0E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2 | 148 | 1.2E-39 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1530 | 1740 | 2.3E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1426 | 1529 | 3.6E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1007 | 1102 | 6.3E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1103 | 1243 | 5.6E-14 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 668 | 882 | 6.6E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 149 | 365 | 1.0E-39 | IPR032675 |
| SMART | SM00220 | serkin_6 | 592 | 865 | 1.4E-34 | IPR000719 |
| SMART | SM00220 | serkin_6 | 1454 | 1727 | 5.1E-34 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1087 | 1109 | 7.742758 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1454 | 1727 | 39.142006 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 592 | 865 | 38.94413 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 598 | 620 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 712 | 724 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1573 | 1585 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1460 | 1482 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 922 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1738 | 1783 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 895 | 922 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1738 | 1771 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79620.1 | Leucine-rich repeat protein kinase family protein. | 6.08E-262 |
| RefSeq | XP_004970368.1 | probable leucine-rich repeat receptor-like protein kinase At5g49770 [Setaria italica] | 0 |
| Q8GZ99 | Leucine-rich repeat receptor protein kinase HPCA1 OS=Arabidopsis thaliana OX=3702 GN=HPCA1 PE=1 SV=1 | 1.2E-216 | |
| TrEMBL | A0A1E5W6E7 | Putative leucine-rich repeat receptor-like protein kinase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0006105 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology