HalophFGD

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Basic Information
Locus ID: CH02.3867
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
CH02 42510919 42516088 + CH02.3867
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.18 47,096.35 Da 68.09 95.32 -0.25
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF81383 F-box domain 75 122 1.7E-7 IPR036047
MobiDBLite mobidb-lite consensus disorder prediction 135 149 - -
MobiDBLite mobidb-lite consensus disorder prediction 125 157 - -
MobiDBLite mobidb-lite consensus disorder prediction 410 427 - -
MobiDBLite mobidb-lite consensus disorder prediction 406 427 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_004980653.1 F-box/LRR-repeat protein 25 [Setaria italica] 2.7E-73
TrEMBL A0A4U6TGB8 F-box domain-containing protein (Fragment) OS=Setaria viridis OX=4556 GN=SEVIR_8G174500v2 PE=4 SV=1 3.59E-70
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Suaeda glauca 1 Sgl52245
Dunaliellaceae Dunaliella salina 1 Dusal.0175s00007.v1.0
Poaceae Echinochloa crus-galli 38 AH01.2194, AH03.3309, AH03.3310, AH03.92, AH03.93, AH03.95 ...
AH03.97, AH04.1753, AH04.1754, AH07.1987, AH07.412, BH03.149, BH03.3474, BH03.3493, BH04.1755, BH04.1757, BH05.3281, BH05.3394, BH05.3991, BH07.529, BH07.537, CH02.3867, CH03.150, CH03.151, CH03.211, CH03.3694, CH03.3695, CH03.3705, CH03.3706, CH03.53, CH05.3376, CH05.3385, CH05.3387, CH05.3388, Contig1297.2, Contig1297.4, Contig1297.5, Contig1297.7
Poaceae Eleusine coracana subsp. coracana 33 gene-QOZ80_2AG0111000, gene-QOZ80_2AG0111010 ...
gene-QOZ80_2BG0164450, gene-QOZ80_4BG0348370, gene-QOZ80_5AG0367070, gene-QOZ80_5AG0387690, gene-QOZ80_5BG0415190, gene-QOZ80_5BG0454240, gene-QOZ80_5BG0454250, gene-QOZ80_7AG0553160, gene-QOZ80_7AG0553170, gene-QOZ80_7AG0553180, gene-QOZ80_7AG0553190, gene-QOZ80_7AG0553200, gene-QOZ80_7AG0553230, gene-QOZ80_7AG0553240, gene-QOZ80_7AG0553250, gene-QOZ80_7AG0555680, gene-QOZ80_7AG0559090, gene-QOZ80_7AG0571290, gene-QOZ80_7AG0571560, gene-QOZ80_7BG0584270, gene-QOZ80_7BG0584290, gene-QOZ80_7BG0586650, gene-QOZ80_7BG0590350, gene-QOZ80_7BG0602720, gene-QOZ80_7BG0603220, gene-QOZ80_7BG0603240, gene-QOZ80_7BG0603300, gene-QOZ80_7BG0603320, gene-QOZ80_9AG0684190, gene-QOZ80_9BG0710270, gene-QOZ80_UnG0726170
Poaceae Hordeum vulgare 7 HORVU.MOREX.r3.1HG0018810.1, HORVU.MOREX.r3.2HG0155620.1 ...
HORVU.MOREX.r3.2HG0155680.1, HORVU.MOREX.r3.2HG0156270.1, HORVU.MOREX.r3.2HG0193230.1, HORVU.MOREX.r3.3HG0239610.1.CDS1, HORVU.MOREX.r3.4HG0395620.1.CDS1
Poaceae Lolium multiflorum 43 gene-QYE76_009425, gene-QYE76_009426, gene-QYE76_009517 ...
gene-QYE76_009518, gene-QYE76_009534, gene-QYE76_009536, gene-QYE76_009541, gene-QYE76_009544, gene-QYE76_009829, gene-QYE76_009853, gene-QYE76_010033, gene-QYE76_010968, gene-QYE76_010969, gene-QYE76_010972, gene-QYE76_013861, gene-QYE76_016365, gene-QYE76_016544, gene-QYE76_027139, gene-QYE76_030511, gene-QYE76_030519, gene-QYE76_039830, gene-QYE76_040676, gene-QYE76_043209, gene-QYE76_046139, gene-QYE76_049207, gene-QYE76_049873, gene-QYE76_050043, gene-QYE76_050284, gene-QYE76_050292, gene-QYE76_050294, gene-QYE76_050835, gene-QYE76_056879, gene-QYE76_057719, gene-QYE76_059966, gene-QYE76_064716, gene-QYE76_068849, gene-QYE76_068850, gene-QYE76_068852, gene-QYE76_068879, gene-QYE76_069011, gene-QYE76_071942, gene-QYE76_071955, gene-QYE76_071956
Poaceae Oryza coarctata 17 Oco01G011170, Oco02G010020, Oco05G025270, Oco12G006760 ...
Oco13G001270, Oco13G009520, Oco14G000530, Oco14G001340, Oco14G001350, Oco14G001390, Oco14G004550, Oco14G004690, Oco14G005510, Oco14G010090, Oco14G010100, Oco14G010120, Oco14G010190
Poaceae Oryza sativa 17 LOC_Os07g02290.1, LOC_Os07g02760.1, LOC_Os07g02770.1 ...
LOC_Os07g04980.1, LOC_Os07g12540.1, LOC_Os07g12560.1, LOC_Os07g12590.2, LOC_Os07g12600.1, LOC_Os07g12610.1, LOC_Os07g36320.1, LOC_Os07g36330.1, LOC_Os07g36340.1, LOC_Os07g36360.1, LOC_Os07g36370.1, LOC_Os07g36400.1, LOC_Os07g36520.1, LOC_Os07g36530.1
Poaceae Paspalum vaginatum 19 gene-BS78_01G085500, gene-BS78_01G128700 ...
gene-BS78_02G012100, gene-BS78_02G012600, gene-BS78_02G013000, gene-BS78_02G013100, gene-BS78_02G063900, gene-BS78_02G309000, gene-BS78_03G168100, gene-BS78_04G025300, gene-BS78_04G025600, gene-BS78_05G063000, gene-BS78_05G177100, gene-BS78_05G177300, gene-BS78_05G177400, gene-BS78_06G155700, gene-BS78_09G039500, gene-BS78_10G233600, gene-BS78_10G233800
Poaceae Puccinellia tenuiflora 31 Pt_Chr0200116, Pt_Chr0200117, Pt_Chr0200122, Pt_Chr0202128 ...
Pt_Chr0202173, Pt_Chr0300431, Pt_Chr0303353, Pt_Chr0303382, Pt_Chr0306501, Pt_Chr0307488, Pt_Chr0500492, Pt_Chr0500495, Pt_Chr0500496, Pt_Chr0500498, Pt_Chr0500499, Pt_Chr0500505, Pt_Chr0500509, Pt_Chr0500554, Pt_Chr0500556, Pt_Chr0501507, Pt_Chr0501622, Pt_Chr0501685, Pt_Chr0501735, Pt_Chr0600005, Pt_Chr0600006, Pt_Chr0600018, Pt_Chr0600019, Pt_Chr0600020, Pt_Chr0605107, Pt_Chr0605108, Pt_Chr0605118
Poaceae Sporobolus alterniflorus 8 Chr07G015770, Chr17G004770, Chr19G018670, Chr24G002210 ...
Chr27G001110, Chr27G012420, Chr28G000460, Chr28G008980
Poaceae Thinopyrum elongatum 12 Tel1E01G164700, Tel1E01G194100, Tel1E01G194300 ...
Tel2E01G172600, Tel2E01G474100, Tel2E01G474300, Tel2E01G475800, Tel3E01G151500, Tel3E01G206300, Tel4E01G552700, Tel6E01G181700, Tel7E01G875400
Poaceae Triticum dicoccoides 16 gene_TRIDC1BG014730, gene_TRIDC2AG037320 ...
gene_TRIDC2AG037600, gene_TRIDC2AG037630, gene_TRIDC2AG047080, gene_TRIDC2BG040300, gene_TRIDC2BG040320, gene_TRIDC2BG040520, gene_TRIDC6AG009650, gene_TRIDC7AG066130, gene_TRIDC7AG071420, gene_TRIDC7BG008080, gene_TRIDC7BG059650, gene_TRIDC7BG066540, gene_TRIDC7BG066590, gene_TRIDC7BG066710
Poaceae Triticum aestivum 35 TraesCS1A02G083900.1.cds1, TraesCS1A02G110700.1 ...
TraesCS1A02G436900.1.cds1, TraesCS1A02G437000.1, TraesCS1B02G101200.1, TraesCS2A02G079100.1, TraesCS2A02G263100.1, TraesCS2A02G264200.3, TraesCS2A02G264400.1, TraesCS2A02G342400.1, TraesCS2A02G435800.1, TraesCS2B02G093900.1, TraesCS2B02G277700.1, TraesCS2B02G277900.1, TraesCS2B02G339900.1, TraesCS2B02G457400.1, TraesCS2D02G259500.1, TraesCS2D02G259700.2, TraesCS2D02G260900.1, TraesCS2D02G434100.1, TraesCS3A02G119900.1.cds1, TraesCS3B02G100300.1, TraesCS3B02G139300.1, TraesCS3D02G085200.1, TraesCS3D02G122000.1, TraesCS6A02G078500.1, TraesCS6A02G085500.1, TraesCS6B02G268400.1, TraesCS7A02G473800.1, TraesCS7A02G509700.1, TraesCS7B02G375100.1, TraesCS7B02G419600.1, TraesCS7B02G420000.1, TraesCS7D02G348800.1.cds1, TraesCS7D02G499100.1
Poaceae Zea mays 3 Zm00001eb116530_P002, Zm00001eb162720_P001 ...
Zm00001eb168800_P001
Poaceae Zoysia japonica 6 nbis-gene-35863, nbis-gene-35864, nbis-gene-35865 ...
nbis-gene-50425, nbis-gene-56969, nbis-gene-57498
Poaceae Zoysia macrostachya 2 Zma_g4686, Zma_g6614
Rhizophoraceae Carallia pectinifolia 1 nbisL1-mrna-19424
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