Basic Information
Locus ID:
CH02.3772
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Putative gypsy type transposon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 41610441 | 41613603 | - | CH02.3772 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 96,005.35 Da | 49.58 | 76.99 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04195 | Putative gypsy type transposon | 82 | 148 | 1.9E-20 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 499 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 496 | - | - |
| Coils | Coil | Coil | 663 | 690 | - | - |
| Coils | Coil | Coil | 740 | 760 | - | - |
| Coils | Coil | Coil | 698 | 718 | - | - |
| Coils | Coil | Coil | 581 | 601 | - | - |
| Coils | Coil | Coil | 624 | 644 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_022680442.1 | uncharacterized protein LOC111256491 [Setaria italica] | 1.57E-58 |
| TrEMBL | A0A8T0QA42 | Retrotransposon protein OS=Panicum virgatum OX=38727 GN=PVAP13_7KG057036 PE=4 SV=1 | 2.67E-67 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||