Basic Information
Locus ID:
CH02.3641
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 40359681 | 40370974 | + | CH02.3641 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 138,451.30 Da | 48.63 | 73.27 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 40 | 166 | 1.04406E-32 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1112 | 1155 | 4.17313E-18 | - |
| CDD | cd12108 | Hr-like | 643 | 802 | 7.13353E-28 | - |
| CDD | cd12108 | Hr-like | 295 | 423 | 2.84839E-18 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 641 | 803 | 1.9E-7 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 42 | 168 | 1.4E-12 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 292 | 424 | 4.4E-7 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 984 | 1059 | 6.8E-18 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1111 | 1158 | 2.74E-7 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1050 | 1105 | 3.01E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 976 | 1040 | 2.09E-16 | IPR037274 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 35 | 186 | 6.1E-33 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1108 | 1156 | 2.2E-8 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 294 | 442 | 5.2E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 638 | 860 | 3.2E-24 | - |
| SMART | SM00184 | ring_2 | 1113 | 1154 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 977 | 1046 | 25.527702 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1113 | 1154 | 11.235273 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1049 | 1112 | 29.678455 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 567 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_025814043.1 | zinc finger protein BRUTUS-like [Panicum hallii] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7DI93 | Zinc finger protein BRUTUS OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G199800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology