Basic Information
Locus ID:
CH02.3474
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 38898213 | 38907361 | - | CH02.3474 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 206,141.47 Da | 44.34 | 88.75 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09274 | RNase_HI_RT_Ty3 | 1251 | 1366 | 9.19134E-43 | - |
| CDD | cd01647 | RT_LTR | 981 | 1157 | 2.50621E-89 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 997 | 1157 | 1.8E-30 | IPR000477 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1220 | 1314 | 5.7E-31 | IPR041577 |
| SUPERFAMILY | SSF81383 | F-box domain | 198 | 263 | 5.56E-5 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 1520 | 1743 | 1.51E-5 | - |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 922 | 1351 | 1.78E-160 | IPR043502 |
| Gene3D | G3DSA:1.20.5.340 | - | 463 | 537 | 7.9E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1453 | 1828 | 4.9E-7 | IPR032675 |
| Gene3D | G3DSA:3.30.70.270 | - | 1022 | 1157 | 5.1E-87 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 1167 | 1256 | 2.2E-27 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 943 | 1082 | 5.1E-87 | - |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 978 | 1157 | 18.797132 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 736 | 764 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 736 | 751 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 202 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051229704.1 | uncharacterized protein LOC127347576 [Lolium perenne] | 1.51E-254 |
| P04323 | Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 3.76E-91 | |
| TrEMBL | A0A3L6QAH4 | Reverse transcriptase domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM15G12530 PE=4 SV=1 | 2.33E-243 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_06G006580 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696290, gene-LOC103709871 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3114.V1.1 |
| Poaceae | Echinochloa crus-galli | 12 | AH02.2967, AH02.2968, AH05.224, AH05.225, AH05.226, BH05.254 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5BG0428880, gene-QOZ80_6AG0538570 |
| Poaceae | Oryza coarctata | 2 | Oco02G019100, Oco02G019110 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g51720.1, LOC_Os01g51740.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G172600 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G022330, Chr06G024100 |
| Poaceae | Zea mays | 1 | Zm00001eb406850_P001 |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc04g03080, gene.Posoc04g03090, gene.Posoc04g03100 ... |