Basic Information
Locus ID:
CH02.3447
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 38646611 | 38650132 | + | CH02.3447 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 43,385.50 Da | 37.43 | 72.28 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 149 | 230 | 2.3E-17 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 284 | 327 | 9.3E-8 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 332 | 388 | 8.6E-19 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 284 | 332 | 5.78E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 221 | 278 | 1.96E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 146 | 220 | 5.62E-15 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 354 | 390 | 1.7E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 279 | 330 | 1.2E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 285 | 327 | 3.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 285 | 328 | 11.913911 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 142 | 218 | 24.896271 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 220 | 284 | 34.44981 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 3.76E-134 |
| RefSeq | XP_025814681.1 | probable E3 ubiquitin-protein ligase RZFP34 [Panicum hallii] | 1.47E-214 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 5.87E-183 | |
| TrEMBL | A0A8T0S1Z1 | E3 ubiquitin-protein ligase RZFP34 OS=Panicum virgatum OX=38727 GN=PVAP13_5NG589400 PE=4 SV=1 | 3.01E-223 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology