halophFGD

Basic Information

Locus ID: CH02.341

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH02	2869310	2875736	+	CH02.341

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.92	144,699.58 Da	36.15	88.33	-0.23

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	86	394	6.63829E-76	-
Pfam	PF00400	WD domain, G-beta repeat	275	308	4.0E-4	IPR001680
Pfam	PF06957	Coatomer (COPI) alpha subunit C-terminus	892	1296	6.5E-173	IPR010714
Pfam	PF00400	WD domain, G-beta repeat	121	156	1.7E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	161	198	3.5E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	318	353	2.0E-5	IPR001680
Pfam	PF04053	Coatomer WD associated region	425	845	4.8E-129	IPR006692
Pfam	PF00400	WD domain, G-beta repeat	203	240	1.7E-7	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	78	392	1.78E-74	IPR036322
SUPERFAMILY	SSF69322	Tricorn protease domain 2	400	671	3.4E-6	-
Gene3D	G3DSA:2.130.10.10	-	77	396	4.9E-126	IPR015943
Gene3D	G3DSA:1.25.40.470	-	717	889	1.0E-60	-
SMART	SM00320	WD40_4	270	309	4.6E-6	IPR001680
SMART	SM00320	WD40_4	201	240	4.5E-11	IPR001680
SMART	SM00320	WD40_4	356	394	230.0	IPR001680
SMART	SM00320	WD40_4	75	114	0.96	IPR001680
SMART	SM00320	WD40_4	117	156	2.1E-6	IPR001680
SMART	SM00320	WD40_4	159	198	5.9E-10	IPR001680
SMART	SM00320	WD40_4	314	353	1.6E-6	IPR001680
PIRSF	PIRSF003354	Alpha-COP	76	1292	0.0	IPR016391
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	277	318	13.11507	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	124	165	13.382416	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	277	311	10.68014	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	321	362	15.120162	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	208	241	12.631039	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	124	159	10.416506	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	208	241	15.320672	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	166	207	13.816853	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	321	353	11.971952	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	166	198	10.970139	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	227	241	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	227	241	4.3E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	185	199	4.3E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	340	354	4.3E-7	IPR020472

Gene Ontology

Biological Process:

GO:0006886 (intracellular protein transport) GO:0016192 (vesicle-mediated transport)

Molecular Function:

GO:0005198 (structural molecule activity) GO:0005515 (protein binding)

Cellular Component:

GO:0030117 (membrane coat) GO:0030126 (COPI vesicle coat)

KEGG Pathway

KO Term:

K05236 (coatomer subunit alpha)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G62020.1	Coatomer, alpha subunit.
RefSeq	XP_004982004.1	coatomer subunit alpha-3 [Setaria italica]
Swiss-Prot	Q0J3D9	Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0127800 PE=2 SV=1
TrEMBL	A0A835FAY4	Coatomer subunit alpha OS=Digitaria exilis OX=1010633 GN=HU200_014579 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg11823, jg22921, jg6331
Aizoaceae	Mesembryanthemum crystallinum	2	gene_21686, gene_23066
Amaranthaceae	Atriplex hortensis	2	Ah010166, Ah023494
Amaranthaceae	Beta vulgaris	2	BVRB_1g006300, BVRB_9g216820
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg12377, Sbi_jg28837, Sbi_jg3100, Sbi_jg45965
Amaranthaceae	Salicornia europaea	2	Seu_jg20296, Seu_jg6800
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000002, GOSA_00005641, GOSA_00022497
Amaranthaceae	Suaeda glauca	4	Sgl11621, Sgl17119, Sgl56148, Sgl60851
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000013151, gene:ENSEOMG00000018082 ... gene:ENSEOMG00000035845, gene:ENSEOMG00000048140, gene:ENSEOMG00000049535
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0009120, CQ.Regalona.r1.1BG0016730 ... CQ.Regalona.r1.7BG0007040, CQ.Regalona.r1.9AG0017560
Anacardiaceae	Pistacia vera	2	pistato.v30047210, pistato.v30115410
Apiaceae	Apium graveolens	3	Ag1G00944, Ag4G02289, Ag9G00871
Arecaceae	Cocos nucifera	4	COCNU_07G005410, COCNU_10G003700, COCNU_10G003710 ... COCNU_16G003990
Arecaceae	Phoenix dactylifera	4	gene-LOC103707916, gene-LOC103711684, gene-LOC103711687 ... gene-LOC103716534
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.1564.V1.1, AsparagusV1_03.1565.V1.1 ... AsparagusV1_03.297.V1.1, AsparagusV1_03.298.V1.1, AsparagusV1_07.3590.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G00265, Ftri9G15036, Ftri9G25855
Brassicaceae	Arabidopsis thaliana	2	AT1G62020.1, AT2G21390.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10000016m.g.v1.0, Thhalv10024239m.g.v1.0 ... Thhalv10024240m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp7g36760.v2.2, SpUn0316_0020.v2.2, SpUn0316_0030.v2.2
Brassicaceae	Brassica nigra	5	BniB02g017130.2N, BniB02g051810.2N, BniB02g089160.2N ... BniB03g015090.2N, BniB05g000410.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G0943, Ceq07G1531
Casuarinaceae	Casuarina glauca	1	Cgl07G1629
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno15g04040, gene.Cymno18g03810
Dunaliellaceae	Dunaliella salina	3	Dusal.1106s00001.v1.0, Dusal.1106s00002.v1.0 ... Dusal.1106s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g04720, gene.Thate07g02870
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG08.198, evm.TU.LG08.200
Plantaginaceae	Plantago ovata	3	Pov_00002523, Pov_00028976, Pov_00032513
Plumbaginaceae	Limonium bicolor	5	Lb3G17297, Lb3G17302, Lb3G17306, Lb4G25861, Lb4G25871
Poaceae	Echinochloa crus-galli	8	AH01.852, AH02.290, BH01.996, BH02.309, BH02.313, CH01.1040 ... CH02.341, CH02.344
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0219120, gene-QOZ80_3AG0232670 ... gene-QOZ80_3BG0264450, gene-QOZ80_3BG0295300
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.4HG0337110.1, HORVU.MOREX.r3.4HG0416190.1
Poaceae	Lolium multiflorum	2	gene-QYE76_062439, gene-QYE76_062878
Poaceae	Oryza coarctata	5	Oco05G021610, Oco05G021620, Oco06G022410, Oco09G003640 ... Oco17G000570
Poaceae	Oryza sativa	3	LOC_Os03g50340.1, LOC_Os03g50350.1, LOC_Os09g04110.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G107100, gene-BS78_04G305200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0101032, Pt_Chr0101145, Pt_Chr0105043
Poaceae	Sporobolus alterniflorus	10	Chr01G007080, Chr01G007120, Chr04G005190, Chr04G026930 ... Chr04G026940, Chr06G030160, Chr06G032340, Chr07G025920, Chr09G002000, Chr12G030370
Poaceae	Thinopyrum elongatum	2	Tel4E01G082500, Tel4E01G606600
Poaceae	Triticum dicoccoides	4	gene_TRIDC4AG041810, gene_TRIDC4BG007220 ... gene_TRIDC4BG062010, gene_TRIDC5AG076630
Poaceae	Triticum aestivum	6	TraesCS4A02G268100.1, TraesCS4B02G046300.1 ... TraesCS4B02G373400.1, TraesCS4D02G045800.1, TraesCS4D02G363900.2, TraesCS5A02G540800.1
Poaceae	Zea mays	3	Zm00001eb054910_P001, Zm00001eb120410_P002 ... Zm00001eb216390_P001
Poaceae	Zoysia japonica	3	nbis-gene-1014, nbis-gene-14818, nbis-gene-15917
Poaceae	Zoysia macrostachya	3	Zma_g2957, Zma_g6445, Zma_g648
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.319, evm.TU.LG08.1772, evm.TU.LG09.1603 ... evm.TU.LG19.583, evm.TU.LG22.723, evm.TU.LG24.47
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g18990, gene.Posoc07g04700, gene.Posoc09g02360
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.2232, evm.TU.Scaffold_2_RagTag.172 ... evm.TU.Scaffold_8_RagTag.1274
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-5035
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11826, nbisL1-mrna-14291, nbisL1-mrna-9935
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15371, nbisL1-mrna-3317, nbisL1-mrna-9423
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000009l.1129, evm.TU.utg000016l.127 ... evm.TU.utg000018l.414
Rhizophoraceae	Kandelia obovata	3	Maker00003675, Maker00005137, Maker00016473
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-13348, nbisL1-mrna-14177
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-11130, nbisL1-mrna-14153, nbisL1-mrna-21077
Salicaceae	Populus euphratica	4	populus_peu28573, populus_peu29997, populus_peu30017 ... populus_peu30018
Solanaceae	Lycium barbarum	2	gene-LOC132617058, gene-LOC132628078
Solanaceae	Solanum chilense	1	SOLCI001135400
Solanaceae	Solanum pennellii	2	gene-LOC107017620, gene-LOC107025827
Tamaricaceae	Reaumuria soongarica	3	STRG.18510_chr09_-, gene_15460, gene_7841
Tamaricaceae	Tamarix chinensis	4	TC09G0602, TC10G0426, TC12G0987, TC12G0989
Zosteraceae	Zostera marina	2	Zosma01g07520.v3.1, Zosma05g00460.v3.1