Basic Information
Locus ID:
CH02.3403
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 38322647 | 38327476 | - | CH02.3403 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 87,489.39 Da | 55.49 | 76.64 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 565 | 597 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 648 | 681 | 0.096 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 37 | 253 | 5.47E-13 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 475 | 782 | 1.96E-50 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 37 | 257 | 5.4E-20 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 449 | 786 | 2.3E-120 | IPR015943 |
| SMART | SM00320 | WD40_4 | 600 | 639 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 466 | 504 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 557 | 597 | 1.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 643 | 681 | 4.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 745 | 784 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 690 | 729 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 515 | 554 | 1.6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 564 | 599 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 564 | 606 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 650 | 683 | 9.731054 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 245 | 10.492389 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 650 | 683 | 11.64467 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 668 | 682 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 584 | 598 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 541 | 555 | 2.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 668 | 682 | 2.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 584 | 598 | 2.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 137 | - | - |
| Coils | Coil | Coil | 780 | 786 | - | - |
| Coils | Coil | Coil | 248 | 278 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 1.9E-280 |
| RefSeq | XP_039848881.1 | protein SPA1-RELATED 4-like [Panicum virgatum] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 1.83E-279 | |
| TrEMBL | A0A8T0SWD7 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5KG517200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology