Basic Information
Locus ID:
CH02.3379
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
FBD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 38173841 | 38175241 | + | CH02.3379 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.25 | 46,856.21 Da | 50.85 | 88.81 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 303 | 342 | 1.2E-6 | IPR006566 |
| SUPERFAMILY | SSF52047 | RNI-like | 109 | 264 | 5.73E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 53 | 1.14E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 53 | 4.5E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 91 | 278 | 5.5E-6 | IPR032675 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26922.1 | F-box/RNI-like superfamily protein. | 3.87E-17 |
| RefSeq | XP_039813417.1 | F-box/FBD/LRR-repeat protein At1g13570-like [Panicum virgatum] | 2.26E-206 |
| Q9LJF8 | F-box/LRR-repeat protein At3g26922 OS=Arabidopsis thaliana OX=3702 GN=At3g26922 PE=2 SV=2 | 3.8E-16 | |
| TrEMBL | A0A8T0S144 | FBD domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5NG478186 PE=4 SV=1 | 5.12E-205 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 10 | AH02.3059, AH02.3061, AH06.1307, BH02.3141, BH02.3142 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0031990, gene-QOZ80_1BG0082200 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0286570.1, HORVU.MOREX.r3.3HG0286590.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_055442, gene-QYE76_055443, gene-QYE76_055444 ... |
| Poaceae | Oryza coarctata | 3 | Oco01G019960, Oco01G019970, Oco02G019800 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g52970.1, LOC_Os01g52980.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G264700 |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0505500, Pt_Chr0506047, Pt_Chr0506051, Pt_Chr0602100 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G010550, Chr03G015420, Chr05G022840, Chr08G015490 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G464000, Tel3E01G464100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG041760, gene_TRIDC3AG041770 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G282200.1, TraesCS3A02G282300.1 ... |