Basic Information
Locus ID:
CH02.3378
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
FBD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 38170386 | 38171953 | + | CH02.3378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 51,334.67 Da | 57.31 | 94.92 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 339 | 379 | 1.4E-4 | IPR006566 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 48 | 9.29E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 109 | 320 | 2.09E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 49 | 7.9E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 93 | 412 | 1.6E-12 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 47 | 8.649649 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26922.1 | F-box/RNI-like superfamily protein. | 9.81E-11 |
| RefSeq | XP_039813417.1 | F-box/FBD/LRR-repeat protein At1g13570-like [Panicum virgatum] | 4.76E-167 |
| Q9LJF8 | F-box/LRR-repeat protein At3g26922 OS=Arabidopsis thaliana OX=3702 GN=At3g26922 PE=2 SV=2 | 9.68E-10 | |
| TrEMBL | A0A3L6STC0 | F-box domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM07G21560 PE=4 SV=1 | 4.71E-226 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 10 | AH02.3059, AH02.3061, AH06.1307, BH02.3141, BH02.3142 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0031990, gene-QOZ80_1BG0082200 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0286570.1, HORVU.MOREX.r3.3HG0286590.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_055442, gene-QYE76_055443, gene-QYE76_055444 ... |
| Poaceae | Oryza coarctata | 3 | Oco01G019960, Oco01G019970, Oco02G019800 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g52970.1, LOC_Os01g52980.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G264700 |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0505500, Pt_Chr0506047, Pt_Chr0506051, Pt_Chr0602100 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G010550, Chr03G015420, Chr05G022840, Chr08G015490 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G464000, Tel3E01G464100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG041760, gene_TRIDC3AG041770 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G282200.1, TraesCS3A02G282300.1 ... |