Basic Information
Locus ID:
CH02.3353
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein of unknown function (DUF1668)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 37902326 | 37905958 | - | CH02.3353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 75,251.44 Da | 44.37 | 78.87 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07893 | Protein of unknown function (DUF1668) | 283 | 668 | 1.5E-98 | IPR012871 |
| SUPERFAMILY | SSF55724 | Mog1p/PsbP-like | 68 | 168 | 3.35E-18 | IPR016123 |
| Gene3D | G3DSA:3.40.1000.10 | Mog1/PsbP, alpha/beta/alpha sandwich | 43 | 169 | 8.2E-18 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 67 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56650.1 | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein. | 1.64E-42 |
| RefSeq | XP_015633187.1 | uncharacterized protein LOC4331313 [Oryza sativa Japonica Group] | 4.54E-182 |
| Q9LXX5 | PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD6 PE=1 SV=1 | 1.59E-41 | |
| TrEMBL | A0A0E0GFV3 | DUF1618 domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 6.34E-182 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology