halophFGD

Basic Information

Locus ID: CH02.3309

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: RING-type E3 ubiquitin transferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH02	37536861	37538185	-	CH02.3309

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.66	40,241.11 Da	62.37	89.71	-0.16

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	231	306	5.2E-16	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	233	310	4.32E-25	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	225	317	1.2E-25	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	1	374	15.015268	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	254	266	-	IPR008271
MobiDBLite	mobidb-lite	consensus disorder prediction	181	212	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	349	374	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G25930.1	Protein kinase family protein with leucine-rich repeat domain.	3.39E-23
RefSeq	XP_039854032.1	U-box domain-containing protein 19-like [Panicum virgatum]	1.01E-63
Swiss-Prot	Q8GRU6	Leucine-rich repeat receptor-like kinase protein HAR1 OS=Lotus japonicus OX=34305 GN=HAR1 PE=1 SV=1	3.56E-21
TrEMBL	A0A8T0R0G8	RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_6NG116800 PE=4 SV=1	2.19E-62

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

No orthogroup found for CH02.3309.