Basic Information
Locus ID:
CH02.3233
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 36879789 | 36882227 | - | CH02.3233 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 51,322.22 Da | 63.83 | 97.59 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 23 | 56 | 5.7E-4 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 87 | 358 | 4.87E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 56 | 1.01E-6 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 132 | 435 | 1.2E-7 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025814292.1 | uncharacterized protein LOC112891603 [Panicum hallii] | 3.58E-240 |
| TrEMBL | A0A1E5VGZ3 | F-box domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0014580 PE=4 SV=1 | 1.27E-242 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH02.3199, AH02.3200, BH02.3691, CH02.3233, CH02.3276 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0033410, gene-QOZ80_1BG0083520 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0289140.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055235 |
| Poaceae | Oryza coarctata | 2 | Oco01G019020, Oco02G020860 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g54850.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G277400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402024, Pt_Chr0602280 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G009570, Chr05G023920 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G476000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG042940, gene_TRIDC3BG048930 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G291000.1, TraesCS3B02G325700.1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13240, nbis-gene-26504 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11158 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g00090 |