Basic Information
Locus ID:
CH02.3178
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Tub family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 36478768 | 36481445 | + | CH02.3178 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 24,485.72 Da | 75.32 | 79.78 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01167 | Tub family | 161 | 218 | 8.4E-24 | IPR000007 |
| Pfam | PF01167 | Tub family | 114 | 149 | 3.8E-7 | IPR000007 |
| Pfam | PF00646 | F-box domain | 51 | 92 | 1.1E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 48 | 94 | 1.44E-6 | IPR036047 |
| SUPERFAMILY | SSF54518 | Tubby C-terminal domain-like | 161 | 224 | 3.92E-25 | IPR025659 |
| SUPERFAMILY | SSF54518 | Tubby C-terminal domain-like | 102 | 158 | 5.49E-8 | IPR025659 |
| Gene3D | G3DSA:1.20.1280.50 | - | 45 | 99 | 2.5E-6 | - |
| Gene3D | G3DSA:3.20.90.10 | Tubby Protein; Chain A | 154 | 224 | 1.5E-25 | IPR025659 |
| ProSitePatterns | PS01201 | Tub family signature 2. | 209 | 224 | - | IPR018066 |
| PRINTS | PR01573 | Tubby superfamily signature | 202 | 224 | 3.6E-21 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 181 | 200 | 3.6E-21 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 152 | 168 | 3.6E-21 | IPR000007 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 28 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53320.1 | tubby like protein 7. Member of TLP family | 3.75E-46 |
| RefSeq | XP_004970029.1 | tubby-like F-box protein 2 [Setaria italica] | 1.3E-109 |
| Q68Y48 | Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP9 PE=2 SV=1 | 2.43E-76 | |
| TrEMBL | K3XJ41 | Tubby-like F-box protein OS=Setaria italica OX=4555 GN=101768018 PE=3 SV=1 | 2.93E-108 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | BH02.3642, BH05.653, CH02.3178 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr08G016700 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31125 |