Basic Information
Locus ID:
CH02.3110
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 36075677 | 36083690 | + | CH02.3110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.02 | 101,022.01 Da | 45.75 | 94.55 | 0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13132 | MATE_eukaryotic | 479 | 915 | 3.57252E-151 | IPR045069 |
| CDD | cd16745 | RING-HC_AtRMA_like | 119 | 163 | 1.14524E-31 | - |
| Pfam | PF01554 | MatE | 489 | 648 | 1.0E-29 | IPR002528 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 120 | 161 | 4.6E-8 | - |
| Pfam | PF01554 | MatE | 718 | 874 | 4.6E-26 | IPR002528 |
| SUPERFAMILY | SSF57850 | RING/U-box | 117 | 167 | 9.15E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 175 | 3.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 121 | 161 | 1.3E-8 | IPR001841 |
| TIGRFAM | TIGR00797 | matE: MATE efflux family protein | 489 | 888 | 1.0E-67 | IPR002528 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 121 | 162 | 13.389211 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 136 | 145 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 207 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47530.1 | MATE efflux family protein. | 1.3E-150 |
| RefSeq | XP_025815334.1 | protein DETOXIFICATION 33-like [Panicum hallii] | 1.85E-295 |
| Q9SX83 | Protein DETOXIFICATION 33 OS=Arabidopsis thaliana OX=3702 GN=DTX33 PE=2 SV=1 | 1.25E-149 | |
| TrEMBL | A0A2T7DGB4 | Protein DETOXIFICATION OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G146200 PE=3 SV=1 | 7.29E-295 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology