Basic Information
Locus ID:
CH02.3076
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 35763894 | 35778779 | + | CH02.3076 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 130,109.72 Da | 45.17 | 77.19 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 202 | 530 | 4.81107E-169 | - |
| CDD | cd00121 | MATH | 61 | 184 | 7.54427E-36 | IPR002083 |
| CDD | cd17039 | Ubl_ubiquitin_like | 599 | 630 | 0.00448447 | - |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 629 | 882 | 1.2E-72 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 892 | 1098 | 2.3E-45 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 204 | 525 | 3.2E-47 | IPR001394 |
| Pfam | PF00917 | MATH domain | 75 | 186 | 1.4E-16 | IPR002083 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 199 | 553 | 1.67E-96 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 58 | 189 | 8.67E-38 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 808 | 905 | 3.1E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 690 | 807 | 4.9E-42 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 201 | 529 | 1.1E-90 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 57 | 200 | 2.2E-49 | IPR008974 |
| SMART | SM00061 | math_3 | 61 | 165 | 1.5E-16 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 204 | 528 | 40.174797 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 59 | 184 | 35.170113 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 205 | 220 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 444 | 461 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_025815032.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Panicum hallii] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T8IJY3 | ubiquitinyl hydrolase 1 OS=Panicum hallii OX=206008 GN=PAHAL_5G142300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology