halophFGD

Basic Information

Locus ID: CH02.3041

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Jacalin-like lectin domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH02	35478810	35481282	+	CH02.3041

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.58	64,314.31 Da	32.19	70.49	-0.36

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09612	Jacalin	24	153	1.97146E-41	IPR033734
CDD	cd09612	Jacalin	252	381	1.22101E-38	IPR033734
CDD	cd09612	Jacalin	442	568	7.74283E-39	IPR033734
Pfam	PF01419	Jacalin-like lectin domain	439	568	3.9E-27	IPR001229
Pfam	PF01419	Jacalin-like lectin domain	252	381	9.4E-28	IPR001229
Pfam	PF01419	Jacalin-like lectin domain	24	152	2.6E-33	IPR001229
SUPERFAMILY	SSF51101	Mannose-binding lectins	426	568	9.81E-39	IPR036404
SUPERFAMILY	SSF51101	Mannose-binding lectins	236	381	3.01E-40	IPR036404
SUPERFAMILY	SSF51101	Mannose-binding lectins	13	152	7.46E-43	IPR036404
Gene3D	G3DSA:2.100.10.30	-	230	381	3.8E-47	IPR036404
Gene3D	G3DSA:2.100.10.30	-	6	153	4.5E-53	IPR036404
Gene3D	G3DSA:2.100.10.30	-	422	568	2.5E-48	IPR036404
SMART	SM00915	Jacalin_2	439	569	2.2E-36	IPR001229
SMART	SM00915	Jacalin_2	252	383	1.5E-38	IPR001229
SMART	SM00915	Jacalin_2	24	154	1.8E-42	IPR001229
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	241	383	47.278488	IPR001229
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	428	569	47.925652	IPR001229
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	13	154	50.40176	IPR001229

Gene Ontology

Molecular Function:

GO:0030246 (carbohydrate binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G19715.1	Mannose-binding lectin superfamily protein.	7.5E-189
RefSeq	XP_025819306.1	jacalin-related lectin 3 [Panicum hallii]	0
Swiss-Prot	F4HQX1	Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1	8.82E-188
TrEMBL	A0A2T7DG23	Jacalin-related lectin 3 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G138700 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10582, jg13569, jg22875, jg27248
Aizoaceae	Mesembryanthemum crystallinum	2	gene_23077, gene_23079
Amaranthaceae	Atriplex hortensis	2	Ah011355, Ah023472
Amaranthaceae	Beta vulgaris	4	BVRB_1g006640, BVRB_1g006650, BVRB_1g006670, BVRB_9g211560
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg28803, Sbi_jg3146, Sbi_jg3153, Sbi_jg39146
Amaranthaceae	Salicornia europaea	2	Seu_jg11011, Seu_jg6762
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000023, GOSA_00009615, GOSA_00014151
Amaranthaceae	Suaeda glauca	9	Sgl11510, Sgl11514, Sgl11516, Sgl11596, Sgl11600, Sgl16965 ... Sgl16968, Sgl17093, Sgl17097
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000013345, gene:ENSEOMG00000013653 ... gene:ENSEOMG00000015107, gene:ENSEOMG00000033716, gene:ENSEOMG00000035061, gene:ENSEOMG00000039654, gene:ENSEOMG00000047367, gene:ENSEOMG00000049597, gene:ENSEOMG00000052705
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1AG0008880, CQ.Regalona.r1.1BG0016950 ... CQ.Regalona.r1.1BG0016970, CQ.Regalona.r1.7AG0015310, CQ.Regalona.r1.9BG0011020
Anacardiaceae	Pistacia vera	1	pistato.v30116130
Apiaceae	Apium graveolens	4	Ag1G00379, Ag2G02820, Ag4G02274, Ag6G01416
Arecaceae	Cocos nucifera	2	COCNU_06G013050, COCNU_06G013120
Arecaceae	Phoenix dactylifera	2	gene-LOC103717797, gene-LOC103719297
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.2115.V1.1, AsparagusV1_05.2895.V1.1 ... AsparagusV1_08.2928.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G02662, Ftri10G07324, Ftri10G25229, Ftri10G27720 ... Ftri10G32015, Ftri18G05095
Brassicaceae	Arabidopsis thaliana	2	AT1G19715.3, AT1G73040.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10007145m.g.v1.0, Thhalv10019210m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g17550.v2.2, Sp5g28000.v2.2
Brassicaceae	Brassica nigra	3	BniB03g008330.2N, BniB04g034420.2N, BniB05g070250.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0901, Ceq03G0975
Casuarinaceae	Casuarina glauca	2	Cgl02G0914, Cgl03G1061
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno10g09320, gene.Cymno16g03180
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g03190, gene.Thate01g03210, gene.Thate09g07520
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1340
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.13, evm.TU.LG06.628
Plantaginaceae	Plantago ovata	1	Pov_00015244
Plumbaginaceae	Limonium bicolor	12	Lb0G36806, Lb0G37360, Lb0G38063, Lb0G38278, Lb0G38317 ... Lb1G00549, Lb1G00551, Lb1G00554, Lb1G02726, Lb2G09419, Lb7G34303, Lb8G35786
Poaceae	Echinochloa crus-galli	9	AH02.3457, AH05.1812, AH08.2131, BH02.3499, BH05.1978 ... CH02.3041, CH02.3531, CH05.2044, CH08.2422
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0035380, gene-QOZ80_1BG0080450 ... gene-QOZ80_1BG0085430, gene-QOZ80_5AG0364930, gene-QOZ80_5AG0367290, gene-QOZ80_5BG0412790, gene-QOZ80_5BG0415010
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0076420.1, HORVU.MOREX.r3.1HG0080180.1 ... HORVU.MOREX.r3.3HG0223290.1, HORVU.MOREX.r3.3HG0292920.1, HORVU.MOREX.r3.7HG0682630.1
Poaceae	Lolium multiflorum	14	gene-QYE76_000100, gene-QYE76_014812, gene-QYE76_016264 ... gene-QYE76_017484, gene-QYE76_024985, gene-QYE76_030195, gene-QYE76_048484, gene-QYE76_048486, gene-QYE76_049155, gene-QYE76_049156, gene-QYE76_049165, gene-QYE76_049168, gene-QYE76_049169, gene-QYE76_049171
Poaceae	Oryza coarctata	7	Oco02G018700, Oco02G022290, Oco09G013680, Oco09G015600 ... Oco10G013760, Oco10G015470, Oco15G010450
Poaceae	Oryza sativa	2	LOC_Os01g51050.1, LOC_Os05g43240.1
Poaceae	Paspalum vaginatum	5	gene-BS78_03G250500, gene-BS78_03G294300, gene-BS78_K113200 ... gene-BS78_09G195900, gene-BS78_09G219000
Poaceae	Puccinellia tenuiflora	12	Pt_Chr0205493, Pt_Chr0205497, Pt_Chr0206968, Pt_Chr0206969 ... Pt_Chr0403695, Pt_Chr0503873, Pt_Chr0503896, Pt_Chr0504260, Pt_Chr0504311, Pt_Chr0601571, Pt_Chr0601601, Pt_Chr0700174
Poaceae	Sporobolus alterniflorus	11	Chr01G014880, Chr02G008190, Chr02G011660, Chr05G025350 ... Chr12G022010, Chr18G013400, Chr18G015100, Chr20G001510, Chr22G002450, Chr22G004290, Chr29G001880
Poaceae	Thinopyrum elongatum	4	Tel1E01G530900, Tel1E01G591000, Tel3E01G506800 ... Tel7E01G451800
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG048350, gene_TRIDC1BG054910 ... gene_TRIDC1BG061170, gene_TRIDC3AG045650, gene_TRIDC3BG023590, gene_TRIDC3BG051780
Poaceae	Triticum aestivum	23	TraesCS1A02G325500.1, TraesCS1A02G363600.1 ... TraesCS1B02G338600.1, TraesCS1B02G380700.1, TraesCS1D02G327100.1, TraesCS1D02G367900.1, TraesCS1D02G368600.1, TraesCS3A02G131600.1, TraesCS3A02G321000.1, TraesCS3B02G031800.1, TraesCS3B02G032600.1, TraesCS3B02G052500.1, TraesCS3B02G053100.1, TraesCS3B02G165200.1, TraesCS3B02G344800.1, TraesCS3D02G028700.1, TraesCS3D02G029200.1, TraesCS3D02G310300.1, TraesCS6A02G105700.1, TraesCS6B02G135000.1, TraesCS7A02G256100.1, TraesCS7B02G152700.1, TraesCS7D02G254500.1
Poaceae	Zea mays	4	Zm00001eb292320_P001, Zm00001eb342390_P002 ... Zm00001eb362900_P001, Zm00001eb369990_P001
Poaceae	Zoysia japonica	5	nbis-gene-11766, nbis-gene-11767, nbis-gene-12697 ... nbis-gene-14375, nbis-gene-24999
Poaceae	Zoysia macrostachya	5	Zma_g24404, Zma_g26906, Zma_g28703, Zma_g8504, Zma_g8764
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.1672, evm.TU.LG10.1158, evm.TU.LG19.563 ... evm.TU.LG24.25
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g11420, gene.Posoc04g19300, gene.Posoc09g05680
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_8_RagTag.1285, evm.TU.Scaffold_8_RagTag.1286
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-9058, nbisL1-mrna-9061, nbisL1-mrna-9062
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-19028
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-15363
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000018l.421
Rhizophoraceae	Kandelia obovata	1	Maker00002978
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-13340, nbisL1-mrna-13341
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-11138, nbisL1-mrna-11139
Salicaceae	Populus euphratica	6	populus_peu15272, populus_peu15273, populus_peu23891 ... populus_peu23895, populus_peu30628, populus_peu32931
Solanaceae	Lycium barbarum	5	gene-LOC132611111, gene-LOC132620346, gene-LOC132623605 ... gene-LOC132629141, gene-LOC132633440
Solanaceae	Solanum chilense	4	SOLCI001343200, SOLCI001343300, SOLCI001819000 ... SOLCI003839100
Solanaceae	Solanum pennellii	4	gene-LOC107002166, gene-LOC107014445, gene-LOC107016210 ... gene-LOC107017061
Tamaricaceae	Reaumuria soongarica	9	STRG.18917_chr07_-, STRG.18921_chr07_-, STRG.18923_chr07_- ... gene_10845, gene_10846, gene_155, gene_1697, gene_4839, gene_6767
Tamaricaceae	Tamarix chinensis	5	TC04G1639, TC08G1814, TC08G1816, TC08G1817, TC08G1820
Zosteraceae	Zostera marina	1	Zosma05g12300.v3.1