Basic Information
Locus ID:
CH02.3014
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 35246237 | 35256305 | + | CH02.3014 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 140,724.81 Da | 51.18 | 70.95 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 529 | 853 | 4.73646E-86 | - |
| CDD | cd18793 | SF2_C_SNF | 1106 | 1215 | 2.3674E-52 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 969 | 1006 | 7.2E-8 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 547 | 931 | 2.9E-68 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1106 | 1205 | 1.1E-14 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 968 | 1015 | 7.07E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 512 | 853 | 5.83E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 862 | 1261 | 1.72E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 618 | 709 | 3.0E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 868 | 1262 | 3.0E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 735 | 854 | 2.5E-27 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 504 | 593 | 3.5E-10 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 962 | 1020 | 1.9E-9 | IPR013083 |
| SMART | SM00487 | ultradead3 | 525 | 832 | 3.3E-29 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1122 | 1205 | 1.2E-17 | IPR001650 |
| SMART | SM00184 | ring_2 | 969 | 1007 | 1.9E-4 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1099 | 1258 | 14.293273 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 604 | 815 | 11.791714 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 969 | 1008 | 10.645153 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 984 | 993 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 705 | 719 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 701 | 750 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 3.18E-295 |
| RefSeq | XP_025814745.1 | helicase-like transcription factor CHR28 isoform X4 [Panicum hallii] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 6.03E-269 | |
| TrEMBL | A0A2S3HR34 | RING-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_5G135200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology