Basic Information
Locus ID:
CH02.2997
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DNA repair metallo-beta-lactamase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 35110297 | 35115778 | + | CH02.2997 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 128,101.27 Da | 48.26 | 84.16 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12854 | PPR repeat | 911 | 942 | 1.3E-10 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 657 | 714 | 7.9E-18 | IPR002885 |
| Pfam | PF07522 | DNA repair metallo-beta-lactamase | 225 | 347 | 5.2E-7 | IPR011084 |
| Pfam | PF13041 | PPR repeat family | 946 | 994 | 6.8E-14 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 810 | 858 | 9.8E-15 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 875 | 908 | 3.3E-9 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 1016 | 1063 | 2.4E-9 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 1086 | 1135 | 1.6E-14 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 739 | 788 | 2.2E-13 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 603 | 648 | 2.3E-10 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 808 | 1042 | 9.86E-6 | IPR011990 |
| SUPERFAMILY | SSF56281 | Metallo-hydrolase/oxidoreductase | 17 | 343 | 5.29E-29 | IPR036866 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 930 | 1031 | 1.9E-34 | IPR011990 |
| Gene3D | G3DSA:3.60.15.10 | - | 6 | 346 | 2.8E-72 | IPR036866 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 646 | 804 | 4.7E-52 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 526 | 645 | 4.3E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 819 | 929 | 1.0E-35 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1032 | 1163 | 1.5E-30 | IPR011990 |
| Gene3D | G3DSA:3.40.50.12650 | - | 159 | 324 | 2.8E-72 | - |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1089 | 1123 | 8.3E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 917 | 943 | 5.8E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 847 | 881 | 1.9E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 984 | 1017 | 7.0E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 707 | 741 | 5.4E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1125 | 1155 | 0.0021 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 672 | 706 | 3.0E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 637 | 671 | 3.8E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 606 | 630 | 2.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 949 | 983 | 2.3E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 882 | 913 | 2.4E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 814 | 846 | 8.5E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1019 | 1053 | 8.8E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 777 | 810 | 7.4E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 742 | 776 | 3.1E-9 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 670 | 704 | 12.474017 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 568 | 602 | 8.582755 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 915 | 945 | 10.500983 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 947 | 981 | 12.452094 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 635 | 669 | 13.635915 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 603 | 633 | 9.63504 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 810 | 844 | 11.520384 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 705 | 739 | 13.515341 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 740 | 774 | 12.769972 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 845 | 879 | 13.76745 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1087 | 1121 | 10.358486 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 982 | 1016 | 12.802855 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 775 | 809 | 11.871145 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1122 | 1156 | 10.566751 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1052 | 1086 | 10.533867 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 880 | 914 | 10.939435 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1017 | 1051 | 10.490022 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 507 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 501 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27410.1 | DNA repair metallo-beta-lactamase family protein. | 7.44E-118 |
| RefSeq | XP_039811296.1 | 5' exonuclease Apollo-like [Panicum virgatum] | 3.33E-259 |
| Q5QJC3 | 5' exonuclease Apollo OS=Gallus gallus OX=9031 GN=DCLRE1B PE=2 SV=1 | 1.73E-48 | |
| TrEMBL | A0A8T0RZZ1 | DRMBL domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5NG532000 PE=4 SV=1 | 7.54E-258 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24182 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20999 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037415 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g206770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24659, Sbi_jg8517 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20076 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022746 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42804, Sgl47554 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015241, gene:ENSEOMG00000039215 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9AG0006680 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30019070 |
| Apiaceae | Apium graveolens | 1 | Ag11G03340 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G010340 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712980 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.220.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G33554 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G27410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001995m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g33700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g070160.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2505 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2597 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g05910 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2152 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1974 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004456 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3499, BH02.3454, CH02.2997 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0035920, gene-QOZ80_1BG0085930 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0293880.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G022010, Oco02G022550 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g57440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G298800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601639, Pt_Chr0601653 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G007860, Chr05G025660 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G514300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG046320, gene_TRIDC3BG052710 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G315700.1, TraesCS3B02G351200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb151390_P001, Zm00001eb369790_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31269 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11290 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1445 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11945 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13314, nbisL1-mrna-2386 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11035 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.833 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012966 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10362 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15407 |
| Salicaceae | Populus euphratica | 3 | populus_peu16734, populus_peu16735, populus_peu16946 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617737, gene-LOC132619496 |
| Solanaceae | Solanum chilense | 1 | SOLCI003459100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024681 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7435 |