Basic Information
Locus ID:
CH02.2964
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 34905669 | 34908193 | + | CH02.2964 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.64 | 50,202.83 Da | 45.42 | 84.64 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 54 | 305 | 2.24E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 65 | 374 | 1.4E-9 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 433 | - | - |
| Coils | Coil | Coil | 374 | 394 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039811005.1 | putative F-box/LRR-repeat protein At3g42770 [Panicum virgatum] | 2.46E-185 |
| TrEMBL | A0A3L6RG93 | F-box/LRR-repeat protein OS=Panicum miliaceum OX=4540 GN=C2845_PM13G13020 PE=4 SV=1 | 2.08E-230 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Plantaginaceae | Plantago ovata | 1 | Pov_00022742 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.3532, AH02.3533, CH02.2963, CH02.2964 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0294500.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056019 |
| Poaceae | Oryza coarctata | 2 | Oco01G022240, Oco02G022850 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g57920.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G298500, gene-BS78_03G302400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601377, Pt_Chr0601696 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G007540, Chr05G025970 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G521000, Tel3E01G521100 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC3AG046870, gene_TRIDC3AG046890 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G326100.1, TraesCS3A02G326200.1 ... |