Basic Information
Locus ID:
CH02.2963
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the CDP-alcohol phosphatidyltransferase class-I family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 34896499 | 34904028 | + | CH02.2963 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 84,022.87 Da | 42.46 | 99.37 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01066 | CDP-alcohol phosphatidyltransferase | 145 | 209 | 1.7E-11 | IPR000462 |
| SUPERFAMILY | SSF52047 | RNI-like | 422 | 695 | 7.46E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 408 | 710 | 2.6E-6 | IPR032675 |
| Gene3D | G3DSA:1.20.120.1760 | - | 141 | 324 | 5.1E-22 | IPR043130 |
| ProSitePatterns | PS00379 | CDP-alcohol phosphatidyltransferases signature. | 187 | 209 | - | IPR000462 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 744 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 762 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 762 | - | - |
| Coils | Coil | Coil | 629 | 649 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04870.1 | cardiolipin synthase. Encodes a protein with cardiolipin synthase activity that is localized to the mitochondiria. | 1.01E-80 |
| RefSeq | XP_039811005.1 | putative F-box/LRR-repeat protein At3g42770 [Panicum virgatum] | 2.12E-207 |
| Q5N9A1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0789100 PE=2 SV=1 | 3.34E-161 | |
| TrEMBL | A0A3L6STU1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic OS=Panicum miliaceum OX=4540 GN=C2845_PM07G26700 PE=3 SV=1 | 6.67E-290 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Plantaginaceae | Plantago ovata | 1 | Pov_00022742 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.3532, AH02.3533, CH02.2963, CH02.2964 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0294500.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056019 |
| Poaceae | Oryza coarctata | 2 | Oco01G022240, Oco02G022850 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g57920.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G298500, gene-BS78_03G302400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601377, Pt_Chr0601696 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G007540, Chr05G025970 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G521000, Tel3E01G521100 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC3AG046870, gene_TRIDC3AG046890 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G326100.1, TraesCS3A02G326200.1 ... |